[2] | 1 | This folder holds cron jobs that support galaxy. |
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| 2 | |
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| 3 | updateucsc.sh is a shell script to facilitate the updates from UCSC. |
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| 4 | Galaxy stores several files locally to speed up operations that depend |
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| 5 | on information from UCSC. These files can all be found in the |
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| 6 | static/ucsc folder. |
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| 7 | |
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| 8 | Before adding updateucsc.sh to the crontab, it is important to note |
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| 9 | two things. First, updateucsc.sh must be edited to point towards the |
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| 10 | root galaxy directory. At the top of the file there is a variable |
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| 11 | "GALAXY" that should be edited. Second, the updates come from UCSC |
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| 12 | via their table browsers. While the tendency is typically to run cron |
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| 13 | jobs late at night, UCSC, like most, tend to take down their servers |
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| 14 | at odd hours for maintenance. The update scripts for UCSC are not CPU |
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| 15 | intensive, and should be scheduled during normal hours. |
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