[3] | 1 | from mako import runtime, filters, cache |
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| 2 | UNDEFINED = runtime.UNDEFINED |
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| 3 | __M_dict_builtin = dict |
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| 4 | __M_locals_builtin = locals |
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| 5 | _magic_number = 5 |
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| 6 | _modified_time = 1287725327.3004439 |
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| 7 | _template_filename='templates/root/history.mako' |
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| 8 | _template_uri='root/history.mako' |
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| 9 | _template_cache=cache.Cache(__name__, _modified_time) |
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| 10 | _source_encoding=None |
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| 11 | _exports = [] |
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| 12 | |
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| 13 | |
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| 14 | def _mako_get_namespace(context, name): |
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| 15 | try: |
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| 16 | return context.namespaces[(__name__, name)] |
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| 17 | except KeyError: |
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| 18 | _mako_generate_namespaces(context) |
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| 19 | return context.namespaces[(__name__, name)] |
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| 20 | def _mako_generate_namespaces(context): |
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| 21 | # SOURCE LINE 364 |
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| 22 | ns = runtime.Namespace('__anon_0x110c0db10', context._clean_inheritance_tokens(), templateuri=u'../tagging_common.mako', callables=None, calling_uri=_template_uri, module=None) |
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| 23 | context.namespaces[(__name__, '__anon_0x110c0db10')] = ns |
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| 24 | |
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| 25 | # SOURCE LINE 365 |
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| 26 | ns = runtime.Namespace('__anon_0x110c0dc10', context._clean_inheritance_tokens(), templateuri=u'history_common.mako', callables=None, calling_uri=_template_uri, module=None) |
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| 27 | context.namespaces[(__name__, '__anon_0x110c0dc10')] = ns |
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| 28 | |
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| 29 | def render_body(context,**pageargs): |
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| 30 | context.caller_stack._push_frame() |
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| 31 | try: |
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| 32 | __M_locals = __M_dict_builtin(pageargs=pageargs) |
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| 33 | _import_ns = {} |
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| 34 | _mako_get_namespace(context, '__anon_0x110c0db10')._populate(_import_ns, [u'render_individual_tagging_element']) |
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| 35 | _mako_get_namespace(context, '__anon_0x110c0dc10')._populate(_import_ns, [u'render_dataset']) |
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| 36 | datasets = _import_ns.get('datasets', context.get('datasets', UNDEFINED)) |
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| 37 | show_deleted = _import_ns.get('show_deleted', context.get('show_deleted', UNDEFINED)) |
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| 38 | h = _import_ns.get('h', context.get('h', UNDEFINED)) |
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| 39 | reversed = _import_ns.get('reversed', context.get('reversed', UNDEFINED)) |
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| 40 | render_dataset = _import_ns.get('render_dataset', context.get('render_dataset', UNDEFINED)) |
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| 41 | trans = _import_ns.get('trans', context.get('trans', UNDEFINED)) |
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| 42 | dict = _import_ns.get('dict', context.get('dict', UNDEFINED)) |
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| 43 | show_hidden = _import_ns.get('show_hidden', context.get('show_hidden', UNDEFINED)) |
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| 44 | render_individual_tagging_element = _import_ns.get('render_individual_tagging_element', context.get('render_individual_tagging_element', UNDEFINED)) |
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| 45 | n_ = _import_ns.get('n_', context.get('n_', UNDEFINED)) |
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| 46 | hda_id = _import_ns.get('hda_id', context.get('hda_id', UNDEFINED)) |
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| 47 | bool = _import_ns.get('bool', context.get('bool', UNDEFINED)) |
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| 48 | annotation = _import_ns.get('annotation', context.get('annotation', UNDEFINED)) |
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| 49 | history = _import_ns.get('history', context.get('history', UNDEFINED)) |
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| 50 | __M_writer = context.writer() |
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| 51 | # SOURCE LINE 1 |
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| 52 | _=n_ |
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| 53 | |
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| 54 | __M_locals.update(__M_dict_builtin([(__M_key, __M_locals_builtin()[__M_key]) for __M_key in ['_'] if __M_key in __M_locals_builtin()])) |
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| 55 | __M_writer(u'\n<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\n\n<html>\n\n<head>\n<title>') |
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| 56 | # SOURCE LINE 7 |
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| 57 | __M_writer(unicode(_('Galaxy History'))) |
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| 58 | __M_writer(u'</title>\n\n') |
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| 59 | # SOURCE LINE 10 |
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| 60 | if bool( [ data for data in history.active_datasets if data.state in ['running', 'queued', '', None ] ] ): |
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| 61 | # SOURCE LINE 11 |
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| 62 | __M_writer(u'<!-- running: do not change this comment, used by TwillTestCase.wait -->\n') |
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| 63 | # SOURCE LINE 13 |
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| 64 | __M_writer(u'\n<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />\n<meta http-equiv="Pragma" content="no-cache">\n\n') |
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| 65 | # SOURCE LINE 17 |
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| 66 | __M_writer(unicode(h.css( "base", "history", "autocomplete_tagging" ))) |
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| 67 | __M_writer(u'\n') |
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| 68 | # SOURCE LINE 18 |
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| 69 | __M_writer(unicode(h.js( "jquery", "jquery.tipsy", "galaxy.base", "json2", "class", "jquery.jstore", "jquery.autocomplete", "autocomplete_tagging" ))) |
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| 70 | __M_writer(u'\n\n<script type="text/javascript">\n\n') |
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| 71 | # SOURCE LINE 22 |
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| 72 | TERMINAL_STATES = ["ok", "error", "empty", "deleted", "discarded", "failed_metadata"] |
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| 73 | |
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| 74 | __M_locals.update(__M_dict_builtin([(__M_key, __M_locals_builtin()[__M_key]) for __M_key in ['TERMINAL_STATES'] if __M_key in __M_locals_builtin()])) |
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| 75 | __M_writer(u'\nTERMINAL_STATES = ') |
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| 76 | # SOURCE LINE 23 |
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| 77 | __M_writer(unicode( h.to_json_string(TERMINAL_STATES) )) |
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| 78 | __M_writer(u';\n\n$(function() {\n var historywrapper = $("div.historyItemWrapper");\n init_history_items(historywrapper);\n historywrapper.each( function() {\n // Delete link\n $(this).find( "div.historyItemButtons > .delete" ).each( function() {\n var data_id = this.id.split( "-" )[1];\n $(this).click( function() {\n $( \'#historyItem-\' + data_id + "> div.historyItemTitleBar" ).addClass( "spinner" );\n $.ajax({\n url: "') |
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| 79 | # SOURCE LINE 35 |
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| 80 | __M_writer(unicode(h.url_for( action='delete_async', id='XXX' ))) |
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| 81 | __M_writer(u'".replace( \'XXX\', data_id ),\n error: function() { alert( "Delete failed" ); },\n success: function(msg) {\n if (msg === "OK") {\n') |
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| 82 | # SOURCE LINE 39 |
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| 83 | if show_deleted: |
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| 84 | # SOURCE LINE 40 |
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| 85 | __M_writer(u' var to_update = {};\n to_update[data_id] = "none";\n updater( to_update );\n') |
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| 86 | # SOURCE LINE 43 |
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| 87 | else: |
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| 88 | # SOURCE LINE 44 |
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| 89 | __M_writer(u' $( "#historyItem-" + data_id ).fadeOut( "fast", function() {\n $( "#historyItemContainer-" + data_id ).remove();\n if ( $( "div.historyItemContainer" ).length < 1 ) {\n $( "#emptyHistoryMessage" ).show();\n }\n });\n') |
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| 90 | # SOURCE LINE 51 |
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| 91 | __M_writer(u' $(".tipsy").remove();\n } else {\n alert( "Delete failed" );\n }\n }\n });\n return false;\n });\n });\n // Undelete link\n $(this).find( "a.historyItemUndelete" ).each( function() {\n var data_id = this.id.split( "-" )[1];\n $(this).click( function() {\n $( \'#historyItem-\' + data_id + " > div.historyItemTitleBar" ).addClass( "spinner" );\n $.ajax({\n url: "') |
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| 92 | # SOURCE LINE 66 |
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| 93 | __M_writer(unicode(h.url_for( controller='dataset', action='undelete_async', id='XXX' ))) |
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| 94 | __M_writer(u'".replace( \'XXX\', data_id ),\n error: function() { alert( "Undelete failed" ) },\n success: function() {\n var to_update = {};\n to_update[data_id] = "none";\n updater( to_update );\n }\n });\n return false;\n });\n });\n\n // Tag handling.\n $(this).find( "a.icon-button.tags").each( function() {\n // Use links parameters but custom URL as ajax URL.\n $(this).click( function() {\n // Get tag area, tag element.\n var history_item = $(this).parents(".historyItem");\n var tag_area = history_item.find(".tag-area");\n var tag_elt = history_item.find(".tag-elt");\n\n // Show or hide tag area; if showing tag area and it\'s empty, fill it.\n if ( tag_area.is( ":hidden" ) ) {\n if (!tag_elt.html()) {\n // Need to fill tag element.\n var href_parms = $(this).attr("href").split("?")[1];\n var ajax_url = "') |
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| 95 | # SOURCE LINE 92 |
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| 96 | __M_writer(unicode(h.url_for( controller='tag', action='get_tagging_elt_async' ))) |
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| 97 | __M_writer(u'?" + href_parms;\n $.ajax({\n url: ajax_url,\n error: function() { alert( "Tagging failed" ) },\n success: function(tag_elt_html) {\n tag_elt.html(tag_elt_html);\n tag_elt.find(".tooltip").tipsy( { gravity: \'s\' } );\n tag_area.slideDown("fast");\n }\n });\n } else {\n // Tag element is filled; show.\n tag_area.slideDown("fast");\n }\n } else {\n // Hide.\n tag_area.slideUp("fast");\n }\n return false; \n });\n });\n\n // Annotation handling.\n $(this).find( "a.icon-button.annotate").each( function() {\n // Use links parameters but custom URL as ajax URL.\n $(this).click( function() {\n // Get tag area, tag element.\n var history_item = $(this).parents(".historyItem");\n var annotation_area = history_item.find(".annotation-area");\n var annotation_elt = history_item.find(".annotation-elt");\n\n // Show or hide annotation area; if showing annotation area and it\'s empty, fill it.\n if ( annotation_area.is( ":hidden" ) ) {\n if (!annotation_elt.html()) {\n // Need to fill annotation element.\n var href_parms = $(this).attr("href").split("?")[1];\n var ajax_url = "') |
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| 98 | # SOURCE LINE 128 |
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| 99 | __M_writer(unicode(h.url_for( controller='dataset', action='get_annotation_async' ))) |
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| 100 | __M_writer(u'?" + href_parms;\n $.ajax({\n url: ajax_url,\n error: function() { alert( "Annotations failed" ) },\n success: function(annotation) {\n if (annotation == "") {\n annotation = "<em>Describe or add notes to dataset</em>";\n }\n annotation_elt.html(annotation);\n annotation_area.find(".tooltip").tipsy( { gravity: \'s\' } );\n async_save_text(\n annotation_elt.attr("id"), annotation_elt.attr("id"),\n "') |
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| 101 | # SOURCE LINE 140 |
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| 102 | __M_writer(unicode(h.url_for( controller="/dataset", action="annotate_async"))) |
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| 103 | __M_writer(u'?" + href_parms,\n "new_annotation", 18, true, 4);\n annotation_area.slideDown("fast");\n }\n });\n } else {\n // Annotation element is filled; show.\n annotation_area.slideDown("fast");\n }\n } else {\n // Hide.\n annotation_area.slideUp("fast");\n }\n return false; \n });\n });\n });\n \n // Trackster links\n function init_trackster_links() {\n $("a.trackster").live( "click", function() {\n var link = $(this),\n hid = link.attr("id").split("_")[1]; // visualize_{id}\n\n $.ajax({\n url: "') |
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| 104 | # SOURCE LINE 165 |
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| 105 | __M_writer(unicode(h.url_for( controller='tracks', action='list_tracks' ))) |
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| 106 | __M_writer(u'",\n data: {\'hid\': hid},\n error: function() { alert( "Visualization error" ); },\n success: function(html) {\n show_modal("Add Track — Select Dataset(s)", html, {\n "New Browser": function() {\n hide_modal();\n },\n "Insert": function() {\n hide_modal();\n },\n "Cancel": function() {\n hide_modal();\n }\n });\n }\n });\n }); \n }\n \n init_trackster_links();\n \n // History rename functionality.\n async_save_text("history-name-container", "history-name", "') |
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| 107 | # SOURCE LINE 188 |
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| 108 | __M_writer(unicode(h.url_for( controller="/history", action="rename_async", id=trans.security.encode_id(history.id) ))) |
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| 109 | __M_writer(u'", "new_name", 18);\n \n // History tagging functionality.\n var historyTagArea = $(\'#history-tag-area\');\n $(\'#history-tag\').click( function() {\n if ( historyTagArea.is( ":hidden" ) ) {\n historyTagArea.slideDown("fast");\n } else {\n historyTagArea.slideUp("fast");\n }\n return false;\n });\n \n // History annotation functionality.\n var historyAnnotationArea = $(\'#history-annotation-area\');\n $(\'#history-annotate\').click( function() {\n if ( historyAnnotationArea.is( ":hidden" ) ) {\n historyAnnotationArea.slideDown("fast");\n } else {\n historyAnnotationArea.slideUp("fast");\n }\n return false;\n });\n async_save_text("history-annotation-container", "history-annotation", "') |
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| 110 | # SOURCE LINE 211 |
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| 111 | __M_writer(unicode(h.url_for( controller="/history", action="annotate_async", id=trans.security.encode_id(history.id) ))) |
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| 112 | __M_writer(u'", "new_annotation", 18, true, 4);\n \n // Updater\n updater(\n ') |
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| 113 | # SOURCE LINE 215 |
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| 114 | __M_writer(unicode( h.to_json_string( dict([(data.id, data.state) for data in reversed( datasets ) if data.visible and data.state not in TERMINAL_STATES]) ) )) |
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| 115 | __M_writer(u'\n );\n \n // Navigate to a dataset.\n') |
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| 116 | # SOURCE LINE 219 |
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| 117 | if hda_id: |
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| 118 | # SOURCE LINE 220 |
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| 119 | __M_writer(u' self.location = "#') |
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| 120 | __M_writer(unicode(hda_id)) |
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| 121 | __M_writer(u'";\n') |
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| 122 | # SOURCE LINE 222 |
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| 123 | __M_writer(u'});\n\n// Looks for changes in dataset state using an async request. Keeps\n// calling itself (via setTimeout) until all datasets are in a terminal\n// state.\nvar updater = function ( tracked_datasets ) {\n // Check if there are any items left to track\n var empty = true;\n for ( i in tracked_datasets ) {\n empty = false;\n break;\n }\n if ( !empty ) {\n setTimeout( function() { updater_callback( tracked_datasets ) }, 4000 );\n }\n};\nvar updater_callback = function ( tracked_datasets ) {\n // Build request data\n var ids = [],\n states = [],\n force_history_refresh = false;\n \n $.each( tracked_datasets, function ( id, state ) {\n ids.push( id );\n states.push( state );\n });\n // Make ajax call\n $.ajax( {\n type: "POST",\n url: "') |
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| 124 | # SOURCE LINE 251 |
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| 125 | __M_writer(unicode(h.url_for( controller='root', action='history_item_updates' ))) |
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| 126 | __M_writer(u'",\n dataType: "json",\n data: { ids: ids.join( "," ), states: states.join( "," ) },\n success : function ( data ) {\n $.each( data, function( id, val ) {\n // Replace HTML\n var container = $("#historyItemContainer-" + id);\n container.html( val.html );\n init_history_items( $("div.historyItemWrapper"), "noinit" );\n // If new state is terminal, stop tracking\n if (TERMINAL_STATES.indexOf(val.state) !== -1) {\n if ( val.force_history_refresh ){\n force_history_refresh = true;\n }\n delete tracked_datasets[ parseInt(id) ];\n } else {\n tracked_datasets[ parseInt(id) ] = val.state;\n }\n });\n if ( force_history_refresh ) {\n parent.frames.galaxy_history.location.reload();\n } else {\n // Keep going (if there are still any items to track)\n updater( tracked_datasets ); \n }\n },\n error: function() {\n // Just retry, like the old method, should try to be smarter\n updater( tracked_datasets );\n }\n });\n};\n\n</script>\n\n<style>\n.historyItemBody {\n display: none;\n}\ndiv.form-row {\n padding: 5px 5px 5px 0px;\n}\n#top-links {\n margin-bottom: 15px;\n}\n#history-name-container {\n display: inline-block;\n color: gray;\n font-weight: bold;\n}\n.editable-text {\n border: solid transparent 1px;\n padding: 3px;\n margin: -4px;\n}\n</style>\n\n<noscript>\n<style>\n.historyItemBody {\n display: block;\n}\n</style>\n</noscript>\n\n</head>\n\n<body class="historyPage">\n<div id="top-links" class="historyLinks">\n \n <a title="') |
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| 127 | # SOURCE LINE 321 |
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| 128 | __M_writer(unicode(_('refresh'))) |
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| 129 | __M_writer(u'" class="icon-button arrow-circle tooltip" href="') |
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| 130 | __M_writer(unicode(h.url_for('history', show_deleted=show_deleted))) |
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| 131 | __M_writer(u'"></a>\n <a title=\'') |
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| 132 | # SOURCE LINE 322 |
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| 133 | __M_writer(unicode(_('collapse all'))) |
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| 134 | __M_writer(u'\' class=\'icon-button toggle tooltip\' href=\'#\' style="display: none;"></a>\n \n') |
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| 135 | # SOURCE LINE 324 |
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| 136 | if trans.get_user(): |
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| 137 | # SOURCE LINE 325 |
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| 138 | __M_writer(u' <div style="width: 40px; float: right; white-space: nowrap;">\n <a id="history-tag" title="Edit history tags" class="icon-button tags tooltip" target="galaxy_main" href="') |
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| 139 | # SOURCE LINE 326 |
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| 140 | __M_writer(unicode(h.url_for( controller='history', action='tag' ))) |
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| 141 | __M_writer(u'"></a>\n <a id="history-annotate" title="Edit history annotation" class="icon-button annotate tooltip" target="galaxy_main" href="') |
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| 142 | # SOURCE LINE 327 |
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| 143 | __M_writer(unicode(h.url_for( controller='history', action='annotate' ))) |
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| 144 | __M_writer(u'"></a>\n </div>\n') |
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| 145 | # SOURCE LINE 330 |
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| 146 | __M_writer(u'\n</div>\n\n<div style="clear: both;"></div>\n\n') |
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| 147 | # SOURCE LINE 335 |
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| 148 | if show_deleted: |
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| 149 | # SOURCE LINE 336 |
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| 150 | __M_writer(u'<div class="historyLinks">\n <a href="') |
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| 151 | # SOURCE LINE 337 |
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| 152 | __M_writer(unicode(h.url_for('history', show_deleted=False))) |
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| 153 | __M_writer(u'">') |
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| 154 | __M_writer(unicode(_('hide deleted'))) |
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| 155 | __M_writer(u'</a>\n</div>\n') |
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| 156 | # SOURCE LINE 340 |
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| 157 | __M_writer(u'\n') |
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| 158 | # SOURCE LINE 341 |
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| 159 | if show_hidden: |
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| 160 | # SOURCE LINE 342 |
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| 161 | __M_writer(u'<div class="historyLinks">\n <a href="') |
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| 162 | # SOURCE LINE 343 |
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| 163 | __M_writer(unicode(h.url_for('history', show_hidden=False))) |
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| 164 | __M_writer(u'">') |
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| 165 | __M_writer(unicode(_('hide hidden'))) |
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| 166 | __M_writer(u'</a>\n</div>\n') |
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| 167 | # SOURCE LINE 346 |
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| 168 | __M_writer(u'\n<div id="history-name-area" class="historyLinks">\n \n') |
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| 169 | # SOURCE LINE 349 |
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| 170 | if trans.get_user(): |
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| 171 | # SOURCE LINE 350 |
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| 172 | __M_writer(u' <div id="history-name-container">\n <div id="history-name" class="tooltip editable-text" title="Click to rename history">') |
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| 173 | # SOURCE LINE 351 |
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| 174 | __M_writer(filters.html_escape(unicode(history.get_display_name() ))) |
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| 175 | __M_writer(u'</div>\n </div>\n') |
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| 176 | # SOURCE LINE 354 |
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| 177 | __M_writer(u' \n</div>\n\n') |
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| 178 | # SOURCE LINE 357 |
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| 179 | if history.deleted: |
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| 180 | # SOURCE LINE 358 |
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| 181 | __M_writer(u' <div class="warningmessagesmall">\n ') |
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| 182 | # SOURCE LINE 359 |
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| 183 | __M_writer(unicode(_('You are currently viewing a deleted history!'))) |
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| 184 | __M_writer(u'\n </div>\n <p></p>\n') |
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| 185 | # SOURCE LINE 363 |
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| 186 | __M_writer(u'\n') |
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| 187 | # SOURCE LINE 364 |
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| 188 | __M_writer(u'\n') |
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| 189 | # SOURCE LINE 365 |
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| 190 | __M_writer(u'\n\n') |
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| 191 | # SOURCE LINE 367 |
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| 192 | if trans.get_user() is not None: |
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| 193 | # SOURCE LINE 368 |
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| 194 | __M_writer(u' <div style="margin: 0px 5px 10px 5px">\n') |
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| 195 | # SOURCE LINE 370 |
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| 196 | __M_writer(u' <div id="history-tag-area" style="display: none">\n <b>Tags:</b>\n ') |
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| 197 | # SOURCE LINE 372 |
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| 198 | __M_writer(unicode(render_individual_tagging_element(user=trans.get_user(), tagged_item=history, elt_context="history.mako", use_toggle_link=False, input_size="20"))) |
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| 199 | __M_writer(u'\n </div>\n \n') |
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| 200 | # SOURCE LINE 376 |
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| 201 | __M_writer(u' <div id="history-annotation-area" style="display: none">\n \t <b>Annotation / Notes:</b>\n \t <div id="history-annotation-container">\n\t\t <div id="history-annotation" class="tooltip editable-text" title="Click to edit annotation">\n') |
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| 202 | # SOURCE LINE 380 |
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| 203 | if annotation: |
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| 204 | # SOURCE LINE 381 |
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| 205 | __M_writer(u' ') |
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| 206 | __M_writer(filters.html_escape(unicode(h.to_unicode( annotation ) ))) |
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| 207 | __M_writer(u'\n') |
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| 208 | # SOURCE LINE 382 |
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| 209 | else: |
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| 210 | # SOURCE LINE 383 |
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| 211 | __M_writer(u' <em>Describe or add notes to history</em>\n') |
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| 212 | # SOURCE LINE 385 |
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| 213 | __M_writer(u'\t\t </div>\n </div>\n </div>\n \n </div>\n') |
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| 214 | # SOURCE LINE 391 |
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| 215 | __M_writer(u'\n') |
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| 216 | # SOURCE LINE 392 |
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| 217 | if not datasets: |
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| 218 | # SOURCE LINE 393 |
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| 219 | __M_writer(u'\n <div class="infomessagesmall" id="emptyHistoryMessage">\n\n') |
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| 220 | # SOURCE LINE 396 |
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| 221 | else: |
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| 222 | # SOURCE LINE 397 |
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| 223 | __M_writer(u'\n') |
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| 224 | # SOURCE LINE 399 |
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| 225 | for data in reversed( datasets ): |
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| 226 | # SOURCE LINE 400 |
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| 227 | if data.visible or show_hidden: |
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| 228 | # SOURCE LINE 401 |
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| 229 | __M_writer(u' <div class="historyItemContainer" id="historyItemContainer-') |
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| 230 | __M_writer(unicode(data.id)) |
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| 231 | __M_writer(u'">\n ') |
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| 232 | # SOURCE LINE 402 |
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| 233 | __M_writer(unicode(render_dataset( data, data.hid, show_deleted_on_refresh = show_deleted, for_editing = True ))) |
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| 234 | __M_writer(u'\n </div>\n') |
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| 235 | # SOURCE LINE 406 |
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| 236 | __M_writer(u'\n <div class="infomessagesmall" id="emptyHistoryMessage" style="display:none;">\n') |
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| 237 | # SOURCE LINE 409 |
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| 238 | __M_writer(u' ') |
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| 239 | __M_writer(unicode(_("Your history is empty. Click 'Get Data' on the left pane to start"))) |
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| 240 | __M_writer(u'\n </div>\n\n</body>\n</html>\n') |
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| 241 | return '' |
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| 242 | finally: |
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| 243 | context.caller_stack._pop_frame() |
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| 244 | |
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| 245 | |
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