[2] | 1 | <display id="ucsc_bigwig" version="1.0.0" name="display at UCSC"> |
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| 2 | <!-- Load links from file: one line to one link --> |
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| 3 | <dynamic_links from_file="tool-data/shared/ucsc/ucsc_build_sites.txt" skip_startswith="#" id="0" name="0"> |
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| 4 | <!-- Define parameters by column from file, allow splitting on builds --> |
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| 5 | <dynamic_param name="site_id" value="0"/> |
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| 6 | <dynamic_param name="ucsc_link" value="1"/> |
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| 7 | <dynamic_param name="builds" value="2" split="True" separator="," /> |
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| 8 | <!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey --> |
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| 9 | <filter>${site_id in $APP.config.ucsc_display_sites}</filter> |
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| 10 | <filter>${dataset.dbkey in $builds}</filter> |
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| 11 | <!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --> |
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| 12 | <url>${ucsc_link}db=${qp($bigwig_file.dbkey)}&hgt.customText=${qp($track.url)}</url> |
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| 13 | <param type="data" name="bigwig_file" url="galaxy_${DATASET_HASH}.bigwig" strip_https="True" /> |
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| 14 | <param type="template" name="track" viewable="True" strip_https="True">track type=bigWig name="${bigwig_file.name}" bigDataUrl=${bigwig_file.url} db=${bigwig_file.dbkey}</param> |
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| 15 | </dynamic_links> |
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| 16 | </display> |
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