[2] | 1 | <tool id="CONVERTER_fasta_to_bowtie_color_index" name="Convert FASTA to Bowtie color space Index" version="1.0.0"> |
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| 2 | <requirements><requirement type='package'>bowtie</requirement></requirements> |
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| 3 | <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> --> |
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| 4 | <!-- Used on the metadata edit page. --> |
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| 5 | <command> |
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| 6 | mkdir ${output.files_path} |
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| 7 | && bowtie-build --quiet |
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| 8 | --color |
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| 9 | -f |
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| 10 | $input ${output.files_path}/${output.metadata.base_name} |
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| 11 | </command> |
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| 12 | <inputs> |
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| 13 | <param name="input" type="data" format="fasta" label="Fasta file"/> |
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| 14 | </inputs> |
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| 15 | <outputs> |
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| 16 | <data name="output" format="bowtie_color_index"/> |
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| 17 | </outputs> |
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| 18 | <help> |
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| 19 | </help> |
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| 20 | </tool> |
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