[2] | 1 | #!/usr/bin/env python |
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| 2 | |
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| 3 | from __future__ import division |
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| 4 | |
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| 5 | import sys |
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| 6 | from galaxy import eggs |
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| 7 | import pkg_resources; pkg_resources.require( "bx-python" ) |
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| 8 | from bx.arrays.array_tree import * |
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| 9 | from bx.arrays.wiggle import WiggleReader |
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| 10 | |
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| 11 | BLOCK_SIZE = 100 |
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| 12 | |
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| 13 | def main(): |
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| 14 | |
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| 15 | input_fname = sys.argv[1] |
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| 16 | out_fname = sys.argv[2] |
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| 17 | |
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| 18 | reader = WiggleReader( open( input_fname ) ) |
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| 19 | |
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| 20 | # Fill array from reader |
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| 21 | d = array_tree_dict_from_reader( reader, {}, block_size = BLOCK_SIZE ) |
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| 22 | |
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| 23 | for array_tree in d.itervalues(): |
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| 24 | array_tree.root.build_summary() |
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| 25 | |
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| 26 | FileArrayTreeDict.dict_to_file( d, open( out_fname, "w" ) ) |
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| 27 | |
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| 28 | if __name__ == "__main__": |
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| 29 | main() |
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