1 | <?xml version="1.0"?> |
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2 | <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
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3 | <BlastOutput> |
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4 | <BlastOutput_program>blastn</BlastOutput_program> |
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5 | <BlastOutput_version>blastn 2.2.17 [Aug-26-2007]</BlastOutput_version> |
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6 | <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
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7 | <BlastOutput_db>Ecoli.fa</BlastOutput_db> |
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8 | <BlastOutput_query-ID>lcl|1_0</BlastOutput_query-ID> |
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9 | <BlastOutput_query-def>0_0.666667</BlastOutput_query-def> |
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10 | <BlastOutput_query-len>30</BlastOutput_query-len> |
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11 | <BlastOutput_param> |
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12 | <Parameters> |
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13 | <Parameters_expect>10</Parameters_expect> |
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14 | <Parameters_sc-match>1</Parameters_sc-match> |
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15 | <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> |
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16 | <Parameters_gap-open>0</Parameters_gap-open> |
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17 | <Parameters_gap-extend>0</Parameters_gap-extend> |
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18 | <Parameters_filter>F</Parameters_filter> |
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19 | </Parameters> |
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20 | </BlastOutput_param> |
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21 | <BlastOutput_iterations> |
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22 | <Iteration> |
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23 | <Iteration_iter-num>1</Iteration_iter-num> |
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24 | <Iteration_query-ID>lcl|1_0</Iteration_query-ID> |
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25 | <Iteration_query-def>0_0.666667</Iteration_query-def> |
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26 | <Iteration_query-len>30</Iteration_query-len> |
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27 | <Iteration_hits> |
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28 | <Hit> |
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29 | <Hit_num>1</Hit_num> |
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30 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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31 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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32 | <Hit_accession>0</Hit_accession> |
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33 | <Hit_len>5528445</Hit_len> |
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34 | <Hit_hsps> |
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35 | <Hsp> |
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36 | <Hsp_num>1</Hsp_num> |
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37 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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38 | <Hsp_score>30</Hsp_score> |
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39 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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40 | <Hsp_query-from>1</Hsp_query-from> |
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41 | <Hsp_query-to>30</Hsp_query-to> |
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42 | <Hsp_hit-from>5436010</Hsp_hit-from> |
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43 | <Hsp_hit-to>5436039</Hsp_hit-to> |
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44 | <Hsp_query-frame>1</Hsp_query-frame> |
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45 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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46 | <Hsp_identity>30</Hsp_identity> |
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47 | <Hsp_positive>30</Hsp_positive> |
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48 | <Hsp_align-len>30</Hsp_align-len> |
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49 | <Hsp_qseq>CGGACAGCGCCGCCACCAACAAAGCCACCA</Hsp_qseq> |
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50 | <Hsp_hseq>CGGACAGCGCCGCCACCAACAAAGCCACCA</Hsp_hseq> |
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51 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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52 | </Hsp> |
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53 | </Hit_hsps> |
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54 | </Hit> |
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55 | </Iteration_hits> |
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56 | <Iteration_stat> |
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57 | <Statistics> |
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58 | <Statistics_db-num>1</Statistics_db-num> |
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59 | <Statistics_db-len>5528445</Statistics_db-len> |
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60 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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61 | <Statistics_eff-space>0</Statistics_eff-space> |
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62 | <Statistics_kappa>0.711</Statistics_kappa> |
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63 | <Statistics_lambda>1.374</Statistics_lambda> |
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64 | <Statistics_entropy>1.31</Statistics_entropy> |
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65 | </Statistics> |
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66 | </Iteration_stat> |
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67 | </Iteration> |
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68 | <Iteration> |
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69 | <Iteration_iter-num>2</Iteration_iter-num> |
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70 | <Iteration_query-ID>lcl|2_0</Iteration_query-ID> |
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71 | <Iteration_query-def>1_0.600000</Iteration_query-def> |
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72 | <Iteration_query-len>30</Iteration_query-len> |
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73 | <Iteration_hits> |
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74 | <Hit> |
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75 | <Hit_num>1</Hit_num> |
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76 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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77 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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78 | <Hit_accession>0</Hit_accession> |
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79 | <Hit_len>5528445</Hit_len> |
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80 | <Hit_hsps> |
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81 | <Hsp> |
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82 | <Hsp_num>1</Hsp_num> |
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83 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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84 | <Hsp_score>30</Hsp_score> |
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85 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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86 | <Hsp_query-from>1</Hsp_query-from> |
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87 | <Hsp_query-to>30</Hsp_query-to> |
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88 | <Hsp_hit-from>696993</Hsp_hit-from> |
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89 | <Hsp_hit-to>697022</Hsp_hit-to> |
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90 | <Hsp_query-frame>1</Hsp_query-frame> |
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91 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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92 | <Hsp_identity>30</Hsp_identity> |
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93 | <Hsp_positive>30</Hsp_positive> |
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94 | <Hsp_align-len>30</Hsp_align-len> |
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95 | <Hsp_qseq>AAAACACCGGATGCTCCGGCGCTGGCAGAT</Hsp_qseq> |
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96 | <Hsp_hseq>AAAACACCGGATGCTCCGGCGCTGGCAGAT</Hsp_hseq> |
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97 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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98 | </Hsp> |
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99 | </Hit_hsps> |
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100 | </Hit> |
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101 | </Iteration_hits> |
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102 | <Iteration_stat> |
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103 | <Statistics> |
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104 | <Statistics_db-num>1</Statistics_db-num> |
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105 | <Statistics_db-len>5528445</Statistics_db-len> |
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106 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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107 | <Statistics_eff-space>0</Statistics_eff-space> |
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108 | <Statistics_kappa>0.711</Statistics_kappa> |
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109 | <Statistics_lambda>1.374</Statistics_lambda> |
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110 | <Statistics_entropy>1.31</Statistics_entropy> |
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111 | </Statistics> |
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112 | </Iteration_stat> |
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113 | </Iteration> |
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114 | <Iteration> |
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115 | <Iteration_iter-num>3</Iteration_iter-num> |
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116 | <Iteration_query-ID>lcl|3_0</Iteration_query-ID> |
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117 | <Iteration_query-def>2_0.400000</Iteration_query-def> |
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118 | <Iteration_query-len>30</Iteration_query-len> |
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119 | <Iteration_hits> |
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120 | <Hit> |
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121 | <Hit_num>1</Hit_num> |
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122 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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123 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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124 | <Hit_accession>0</Hit_accession> |
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125 | <Hit_len>5528445</Hit_len> |
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126 | <Hit_hsps> |
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127 | <Hsp> |
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128 | <Hsp_num>1</Hsp_num> |
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129 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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130 | <Hsp_score>30</Hsp_score> |
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131 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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132 | <Hsp_query-from>1</Hsp_query-from> |
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133 | <Hsp_query-to>30</Hsp_query-to> |
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134 | <Hsp_hit-from>4100018</Hsp_hit-from> |
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135 | <Hsp_hit-to>4100047</Hsp_hit-to> |
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136 | <Hsp_query-frame>1</Hsp_query-frame> |
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137 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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138 | <Hsp_identity>30</Hsp_identity> |
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139 | <Hsp_positive>30</Hsp_positive> |
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140 | <Hsp_align-len>30</Hsp_align-len> |
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141 | <Hsp_qseq>TTTGCTTTTAGTACACCGGATTCAGAACCA</Hsp_qseq> |
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142 | <Hsp_hseq>TTTGCTTTTAGTACACCGGATTCAGAACCA</Hsp_hseq> |
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143 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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144 | </Hsp> |
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145 | </Hit_hsps> |
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146 | </Hit> |
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147 | </Iteration_hits> |
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148 | <Iteration_stat> |
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149 | <Statistics> |
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150 | <Statistics_db-num>1</Statistics_db-num> |
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151 | <Statistics_db-len>5528445</Statistics_db-len> |
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152 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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153 | <Statistics_eff-space>0</Statistics_eff-space> |
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154 | <Statistics_kappa>0.711</Statistics_kappa> |
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155 | <Statistics_lambda>1.374</Statistics_lambda> |
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156 | <Statistics_entropy>1.31</Statistics_entropy> |
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157 | </Statistics> |
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158 | </Iteration_stat> |
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159 | </Iteration> |
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160 | <Iteration> |
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161 | <Iteration_iter-num>4</Iteration_iter-num> |
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162 | <Iteration_query-ID>lcl|4_0</Iteration_query-ID> |
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163 | <Iteration_query-def>3_0.566667</Iteration_query-def> |
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164 | <Iteration_query-len>30</Iteration_query-len> |
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165 | <Iteration_hits> |
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166 | <Hit> |
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167 | <Hit_num>1</Hit_num> |
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168 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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169 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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170 | <Hit_accession>0</Hit_accession> |
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171 | <Hit_len>5528445</Hit_len> |
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172 | <Hit_hsps> |
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173 | <Hsp> |
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174 | <Hsp_num>1</Hsp_num> |
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175 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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176 | <Hsp_score>30</Hsp_score> |
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177 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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178 | <Hsp_query-from>30</Hsp_query-from> |
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179 | <Hsp_query-to>1</Hsp_query-to> |
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180 | <Hsp_hit-from>2305844</Hsp_hit-from> |
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181 | <Hsp_hit-to>2305873</Hsp_hit-to> |
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182 | <Hsp_query-frame>1</Hsp_query-frame> |
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183 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
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184 | <Hsp_identity>30</Hsp_identity> |
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185 | <Hsp_positive>30</Hsp_positive> |
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186 | <Hsp_align-len>30</Hsp_align-len> |
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187 | <Hsp_qseq>CCGTCCAGAAAGGTGTATTCATGGGGACGG</Hsp_qseq> |
---|
188 | <Hsp_hseq>CCGTCCAGAAAGGTGTATTCATGGGGACGG</Hsp_hseq> |
---|
189 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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190 | </Hsp> |
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191 | </Hit_hsps> |
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192 | </Hit> |
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193 | </Iteration_hits> |
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194 | <Iteration_stat> |
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195 | <Statistics> |
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196 | <Statistics_db-num>1</Statistics_db-num> |
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197 | <Statistics_db-len>5528445</Statistics_db-len> |
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198 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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199 | <Statistics_eff-space>0</Statistics_eff-space> |
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200 | <Statistics_kappa>0.711</Statistics_kappa> |
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201 | <Statistics_lambda>1.374</Statistics_lambda> |
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202 | <Statistics_entropy>1.31</Statistics_entropy> |
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203 | </Statistics> |
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204 | </Iteration_stat> |
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205 | </Iteration> |
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206 | <Iteration> |
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207 | <Iteration_iter-num>5</Iteration_iter-num> |
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208 | <Iteration_query-ID>lcl|5_0</Iteration_query-ID> |
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209 | <Iteration_query-def>4_0.766667</Iteration_query-def> |
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210 | <Iteration_query-len>30</Iteration_query-len> |
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211 | <Iteration_hits> |
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212 | <Hit> |
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213 | <Hit_num>1</Hit_num> |
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214 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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215 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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216 | <Hit_accession>0</Hit_accession> |
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217 | <Hit_len>5528445</Hit_len> |
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218 | <Hit_hsps> |
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219 | <Hsp> |
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220 | <Hsp_num>1</Hsp_num> |
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221 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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222 | <Hsp_score>30</Hsp_score> |
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223 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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224 | <Hsp_query-from>1</Hsp_query-from> |
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225 | <Hsp_query-to>30</Hsp_query-to> |
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226 | <Hsp_hit-from>3457901</Hsp_hit-from> |
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227 | <Hsp_hit-to>3457930</Hsp_hit-to> |
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228 | <Hsp_query-frame>1</Hsp_query-frame> |
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229 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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230 | <Hsp_identity>30</Hsp_identity> |
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231 | <Hsp_positive>30</Hsp_positive> |
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232 | <Hsp_align-len>30</Hsp_align-len> |
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233 | <Hsp_qseq>CACGCTACGTGCGCCCCCGCCCAGAAGGCG</Hsp_qseq> |
---|
234 | <Hsp_hseq>CACGCTACGTGCGCCCCCGCCCAGAAGGCG</Hsp_hseq> |
---|
235 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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236 | </Hsp> |
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237 | </Hit_hsps> |
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238 | </Hit> |
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239 | </Iteration_hits> |
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240 | <Iteration_stat> |
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241 | <Statistics> |
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242 | <Statistics_db-num>1</Statistics_db-num> |
---|
243 | <Statistics_db-len>5528445</Statistics_db-len> |
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244 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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245 | <Statistics_eff-space>0</Statistics_eff-space> |
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246 | <Statistics_kappa>0.711</Statistics_kappa> |
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247 | <Statistics_lambda>1.374</Statistics_lambda> |
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248 | <Statistics_entropy>1.31</Statistics_entropy> |
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249 | </Statistics> |
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250 | </Iteration_stat> |
---|
251 | </Iteration> |
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252 | <Iteration> |
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253 | <Iteration_iter-num>6</Iteration_iter-num> |
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254 | <Iteration_query-ID>lcl|6_0</Iteration_query-ID> |
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255 | <Iteration_query-def>5_0.533333</Iteration_query-def> |
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256 | <Iteration_query-len>30</Iteration_query-len> |
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257 | <Iteration_hits> |
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258 | <Hit> |
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259 | <Hit_num>1</Hit_num> |
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260 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
261 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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262 | <Hit_accession>0</Hit_accession> |
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263 | <Hit_len>5528445</Hit_len> |
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264 | <Hit_hsps> |
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265 | <Hsp> |
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266 | <Hsp_num>1</Hsp_num> |
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267 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
268 | <Hsp_score>30</Hsp_score> |
---|
269 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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270 | <Hsp_query-from>30</Hsp_query-from> |
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271 | <Hsp_query-to>1</Hsp_query-to> |
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272 | <Hsp_hit-from>1264131</Hsp_hit-from> |
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273 | <Hsp_hit-to>1264160</Hsp_hit-to> |
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274 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
275 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
276 | <Hsp_identity>30</Hsp_identity> |
---|
277 | <Hsp_positive>30</Hsp_positive> |
---|
278 | <Hsp_align-len>30</Hsp_align-len> |
---|
279 | <Hsp_qseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_qseq> |
---|
280 | <Hsp_hseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_hseq> |
---|
281 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
282 | </Hsp> |
---|
283 | <Hsp> |
---|
284 | <Hsp_num>2</Hsp_num> |
---|
285 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
286 | <Hsp_score>30</Hsp_score> |
---|
287 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
288 | <Hsp_query-from>30</Hsp_query-from> |
---|
289 | <Hsp_query-to>1</Hsp_query-to> |
---|
290 | <Hsp_hit-from>1636485</Hsp_hit-from> |
---|
291 | <Hsp_hit-to>1636514</Hsp_hit-to> |
---|
292 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
293 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
294 | <Hsp_identity>30</Hsp_identity> |
---|
295 | <Hsp_positive>30</Hsp_positive> |
---|
296 | <Hsp_align-len>30</Hsp_align-len> |
---|
297 | <Hsp_qseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_qseq> |
---|
298 | <Hsp_hseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_hseq> |
---|
299 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
300 | </Hsp> |
---|
301 | <Hsp> |
---|
302 | <Hsp_num>3</Hsp_num> |
---|
303 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
304 | <Hsp_score>30</Hsp_score> |
---|
305 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
306 | <Hsp_query-from>1</Hsp_query-from> |
---|
307 | <Hsp_query-to>30</Hsp_query-to> |
---|
308 | <Hsp_hit-from>2318694</Hsp_hit-from> |
---|
309 | <Hsp_hit-to>2318723</Hsp_hit-to> |
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310 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
311 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
312 | <Hsp_identity>30</Hsp_identity> |
---|
313 | <Hsp_positive>30</Hsp_positive> |
---|
314 | <Hsp_align-len>30</Hsp_align-len> |
---|
315 | <Hsp_qseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_qseq> |
---|
316 | <Hsp_hseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_hseq> |
---|
317 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
318 | </Hsp> |
---|
319 | <Hsp> |
---|
320 | <Hsp_num>4</Hsp_num> |
---|
321 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
322 | <Hsp_score>30</Hsp_score> |
---|
323 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
324 | <Hsp_query-from>1</Hsp_query-from> |
---|
325 | <Hsp_query-to>30</Hsp_query-to> |
---|
326 | <Hsp_hit-from>2777043</Hsp_hit-from> |
---|
327 | <Hsp_hit-to>2777072</Hsp_hit-to> |
---|
328 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
329 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
330 | <Hsp_identity>30</Hsp_identity> |
---|
331 | <Hsp_positive>30</Hsp_positive> |
---|
332 | <Hsp_align-len>30</Hsp_align-len> |
---|
333 | <Hsp_qseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_qseq> |
---|
334 | <Hsp_hseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_hseq> |
---|
335 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
336 | </Hsp> |
---|
337 | </Hit_hsps> |
---|
338 | </Hit> |
---|
339 | </Iteration_hits> |
---|
340 | <Iteration_stat> |
---|
341 | <Statistics> |
---|
342 | <Statistics_db-num>1</Statistics_db-num> |
---|
343 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
344 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
345 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
346 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
347 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
348 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
349 | </Statistics> |
---|
350 | </Iteration_stat> |
---|
351 | </Iteration> |
---|
352 | <Iteration> |
---|
353 | <Iteration_iter-num>7</Iteration_iter-num> |
---|
354 | <Iteration_query-ID>lcl|7_0</Iteration_query-ID> |
---|
355 | <Iteration_query-def>6_0.533333</Iteration_query-def> |
---|
356 | <Iteration_query-len>30</Iteration_query-len> |
---|
357 | <Iteration_hits> |
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358 | <Hit> |
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359 | <Hit_num>1</Hit_num> |
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360 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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361 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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362 | <Hit_accession>0</Hit_accession> |
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363 | <Hit_len>5528445</Hit_len> |
---|
364 | <Hit_hsps> |
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365 | <Hsp> |
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366 | <Hsp_num>1</Hsp_num> |
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367 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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368 | <Hsp_score>30</Hsp_score> |
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369 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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370 | <Hsp_query-from>1</Hsp_query-from> |
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371 | <Hsp_query-to>30</Hsp_query-to> |
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372 | <Hsp_hit-from>1185124</Hsp_hit-from> |
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373 | <Hsp_hit-to>1185153</Hsp_hit-to> |
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374 | <Hsp_query-frame>1</Hsp_query-frame> |
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375 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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376 | <Hsp_identity>30</Hsp_identity> |
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377 | <Hsp_positive>30</Hsp_positive> |
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378 | <Hsp_align-len>30</Hsp_align-len> |
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379 | <Hsp_qseq>TAAGCCGTTACTGGCAGCAAGTGCAGGCAA</Hsp_qseq> |
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380 | <Hsp_hseq>TAAGCCGTTACTGGCAGCAAGTGCAGGCAA</Hsp_hseq> |
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381 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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382 | </Hsp> |
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383 | </Hit_hsps> |
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384 | </Hit> |
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385 | </Iteration_hits> |
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386 | <Iteration_stat> |
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387 | <Statistics> |
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388 | <Statistics_db-num>1</Statistics_db-num> |
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389 | <Statistics_db-len>5528445</Statistics_db-len> |
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390 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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391 | <Statistics_eff-space>0</Statistics_eff-space> |
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392 | <Statistics_kappa>0.711</Statistics_kappa> |
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393 | <Statistics_lambda>1.374</Statistics_lambda> |
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394 | <Statistics_entropy>1.31</Statistics_entropy> |
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395 | </Statistics> |
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396 | </Iteration_stat> |
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397 | </Iteration> |
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398 | <Iteration> |
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399 | <Iteration_iter-num>8</Iteration_iter-num> |
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400 | <Iteration_query-ID>lcl|8_0</Iteration_query-ID> |
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401 | <Iteration_query-def>7_0.400000</Iteration_query-def> |
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402 | <Iteration_query-len>30</Iteration_query-len> |
---|
403 | <Iteration_hits> |
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404 | <Hit> |
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405 | <Hit_num>1</Hit_num> |
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406 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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407 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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408 | <Hit_accession>0</Hit_accession> |
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409 | <Hit_len>5528445</Hit_len> |
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410 | <Hit_hsps> |
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411 | <Hsp> |
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412 | <Hsp_num>1</Hsp_num> |
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413 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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414 | <Hsp_score>30</Hsp_score> |
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415 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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416 | <Hsp_query-from>1</Hsp_query-from> |
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417 | <Hsp_query-to>30</Hsp_query-to> |
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418 | <Hsp_hit-from>2458203</Hsp_hit-from> |
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419 | <Hsp_hit-to>2458232</Hsp_hit-to> |
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420 | <Hsp_query-frame>1</Hsp_query-frame> |
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421 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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422 | <Hsp_identity>30</Hsp_identity> |
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423 | <Hsp_positive>30</Hsp_positive> |
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424 | <Hsp_align-len>30</Hsp_align-len> |
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425 | <Hsp_qseq>TGAATTTACCGTTATCTATCTTGCCTGCCT</Hsp_qseq> |
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426 | <Hsp_hseq>TGAATTTACCGTTATCTATCTTGCCTGCCT</Hsp_hseq> |
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427 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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428 | </Hsp> |
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429 | </Hit_hsps> |
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430 | </Hit> |
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431 | </Iteration_hits> |
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432 | <Iteration_stat> |
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433 | <Statistics> |
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434 | <Statistics_db-num>1</Statistics_db-num> |
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435 | <Statistics_db-len>5528445</Statistics_db-len> |
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436 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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437 | <Statistics_eff-space>0</Statistics_eff-space> |
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438 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
439 | <Statistics_lambda>1.374</Statistics_lambda> |
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440 | <Statistics_entropy>1.31</Statistics_entropy> |
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441 | </Statistics> |
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442 | </Iteration_stat> |
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443 | </Iteration> |
---|
444 | <Iteration> |
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445 | <Iteration_iter-num>10</Iteration_iter-num> |
---|
446 | <Iteration_query-ID>lcl|10_0</Iteration_query-ID> |
---|
447 | <Iteration_query-def>9_0.400000</Iteration_query-def> |
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448 | <Iteration_query-len>30</Iteration_query-len> |
---|
449 | <Iteration_hits> |
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450 | <Hit> |
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451 | <Hit_num>1</Hit_num> |
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452 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
453 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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454 | <Hit_accession>0</Hit_accession> |
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455 | <Hit_len>5528445</Hit_len> |
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456 | <Hit_hsps> |
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457 | <Hsp> |
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458 | <Hsp_num>1</Hsp_num> |
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459 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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460 | <Hsp_score>30</Hsp_score> |
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461 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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462 | <Hsp_query-from>1</Hsp_query-from> |
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463 | <Hsp_query-to>30</Hsp_query-to> |
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464 | <Hsp_hit-from>5286666</Hsp_hit-from> |
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465 | <Hsp_hit-to>5286695</Hsp_hit-to> |
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466 | <Hsp_query-frame>1</Hsp_query-frame> |
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467 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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468 | <Hsp_identity>30</Hsp_identity> |
---|
469 | <Hsp_positive>30</Hsp_positive> |
---|
470 | <Hsp_align-len>30</Hsp_align-len> |
---|
471 | <Hsp_qseq>GCGTTTTGCTAAACTTCTGCCGGAATATAA</Hsp_qseq> |
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472 | <Hsp_hseq>GCGTTTTGCTAAACTTCTGCCGGAATATAA</Hsp_hseq> |
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473 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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474 | </Hsp> |
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475 | </Hit_hsps> |
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476 | </Hit> |
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477 | </Iteration_hits> |
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478 | <Iteration_stat> |
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479 | <Statistics> |
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480 | <Statistics_db-num>1</Statistics_db-num> |
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481 | <Statistics_db-len>5528445</Statistics_db-len> |
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482 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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483 | <Statistics_eff-space>0</Statistics_eff-space> |
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484 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
485 | <Statistics_lambda>1.374</Statistics_lambda> |
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486 | <Statistics_entropy>1.31</Statistics_entropy> |
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487 | </Statistics> |
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488 | </Iteration_stat> |
---|
489 | </Iteration> |
---|
490 | <Iteration> |
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491 | <Iteration_iter-num>11</Iteration_iter-num> |
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492 | <Iteration_query-ID>lcl|11_0</Iteration_query-ID> |
---|
493 | <Iteration_query-def>10_0.500000</Iteration_query-def> |
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494 | <Iteration_query-len>30</Iteration_query-len> |
---|
495 | <Iteration_hits> |
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496 | <Hit> |
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497 | <Hit_num>1</Hit_num> |
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498 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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499 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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500 | <Hit_accession>0</Hit_accession> |
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501 | <Hit_len>5528445</Hit_len> |
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502 | <Hit_hsps> |
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503 | <Hsp> |
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504 | <Hsp_num>1</Hsp_num> |
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505 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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506 | <Hsp_score>30</Hsp_score> |
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507 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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508 | <Hsp_query-from>1</Hsp_query-from> |
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509 | <Hsp_query-to>30</Hsp_query-to> |
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510 | <Hsp_hit-from>2787672</Hsp_hit-from> |
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511 | <Hsp_hit-to>2787701</Hsp_hit-to> |
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512 | <Hsp_query-frame>1</Hsp_query-frame> |
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513 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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514 | <Hsp_identity>30</Hsp_identity> |
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515 | <Hsp_positive>30</Hsp_positive> |
---|
516 | <Hsp_align-len>30</Hsp_align-len> |
---|
517 | <Hsp_qseq>AAAGAGGCGAGCAGAGTAAAACGCAGGCAA</Hsp_qseq> |
---|
518 | <Hsp_hseq>AAAGAGGCGAGCAGAGTAAAACGCAGGCAA</Hsp_hseq> |
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519 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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520 | </Hsp> |
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521 | </Hit_hsps> |
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522 | </Hit> |
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523 | </Iteration_hits> |
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524 | <Iteration_stat> |
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525 | <Statistics> |
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526 | <Statistics_db-num>1</Statistics_db-num> |
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527 | <Statistics_db-len>5528445</Statistics_db-len> |
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528 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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529 | <Statistics_eff-space>0</Statistics_eff-space> |
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530 | <Statistics_kappa>0.711</Statistics_kappa> |
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531 | <Statistics_lambda>1.374</Statistics_lambda> |
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532 | <Statistics_entropy>1.31</Statistics_entropy> |
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533 | </Statistics> |
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534 | </Iteration_stat> |
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535 | </Iteration> |
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536 | <Iteration> |
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537 | <Iteration_iter-num>13</Iteration_iter-num> |
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538 | <Iteration_query-ID>lcl|13_0</Iteration_query-ID> |
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539 | <Iteration_query-def>12_0.700000</Iteration_query-def> |
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540 | <Iteration_query-len>30</Iteration_query-len> |
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541 | <Iteration_hits> |
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542 | <Hit> |
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543 | <Hit_num>1</Hit_num> |
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544 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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545 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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546 | <Hit_accession>0</Hit_accession> |
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547 | <Hit_len>5528445</Hit_len> |
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548 | <Hit_hsps> |
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549 | <Hsp> |
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550 | <Hsp_num>1</Hsp_num> |
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551 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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552 | <Hsp_score>30</Hsp_score> |
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553 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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554 | <Hsp_query-from>1</Hsp_query-from> |
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555 | <Hsp_query-to>30</Hsp_query-to> |
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556 | <Hsp_hit-from>4116145</Hsp_hit-from> |
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557 | <Hsp_hit-to>4116174</Hsp_hit-to> |
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558 | <Hsp_query-frame>1</Hsp_query-frame> |
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559 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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560 | <Hsp_identity>30</Hsp_identity> |
---|
561 | <Hsp_positive>30</Hsp_positive> |
---|
562 | <Hsp_align-len>30</Hsp_align-len> |
---|
563 | <Hsp_qseq>GCGGACGATCTTCACGGTCGCCACGCGGAC</Hsp_qseq> |
---|
564 | <Hsp_hseq>GCGGACGATCTTCACGGTCGCCACGCGGAC</Hsp_hseq> |
---|
565 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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566 | </Hsp> |
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567 | </Hit_hsps> |
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568 | </Hit> |
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569 | </Iteration_hits> |
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570 | <Iteration_stat> |
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571 | <Statistics> |
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572 | <Statistics_db-num>1</Statistics_db-num> |
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573 | <Statistics_db-len>5528445</Statistics_db-len> |
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574 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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575 | <Statistics_eff-space>0</Statistics_eff-space> |
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576 | <Statistics_kappa>0.711</Statistics_kappa> |
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577 | <Statistics_lambda>1.374</Statistics_lambda> |
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578 | <Statistics_entropy>1.31</Statistics_entropy> |
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579 | </Statistics> |
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580 | </Iteration_stat> |
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581 | </Iteration> |
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582 | <Iteration> |
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583 | <Iteration_iter-num>14</Iteration_iter-num> |
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584 | <Iteration_query-ID>lcl|14_0</Iteration_query-ID> |
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585 | <Iteration_query-def>13_0.533333</Iteration_query-def> |
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586 | <Iteration_query-len>30</Iteration_query-len> |
---|
587 | <Iteration_hits> |
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588 | <Hit> |
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589 | <Hit_num>1</Hit_num> |
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590 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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591 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
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592 | <Hit_accession>0</Hit_accession> |
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593 | <Hit_len>5528445</Hit_len> |
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594 | <Hit_hsps> |
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595 | <Hsp> |
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596 | <Hsp_num>1</Hsp_num> |
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597 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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598 | <Hsp_score>30</Hsp_score> |
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599 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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600 | <Hsp_query-from>1</Hsp_query-from> |
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601 | <Hsp_query-to>30</Hsp_query-to> |
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602 | <Hsp_hit-from>5442351</Hsp_hit-from> |
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603 | <Hsp_hit-to>5442380</Hsp_hit-to> |
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604 | <Hsp_query-frame>1</Hsp_query-frame> |
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605 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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606 | <Hsp_identity>30</Hsp_identity> |
---|
607 | <Hsp_positive>30</Hsp_positive> |
---|
608 | <Hsp_align-len>30</Hsp_align-len> |
---|
609 | <Hsp_qseq>TTCTTGTTGGATGGCATACTCCGGCAGCCA</Hsp_qseq> |
---|
610 | <Hsp_hseq>TTCTTGTTGGATGGCATACTCCGGCAGCCA</Hsp_hseq> |
---|
611 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
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612 | </Hsp> |
---|
613 | </Hit_hsps> |
---|
614 | </Hit> |
---|
615 | </Iteration_hits> |
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616 | <Iteration_stat> |
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617 | <Statistics> |
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618 | <Statistics_db-num>1</Statistics_db-num> |
---|
619 | <Statistics_db-len>5528445</Statistics_db-len> |
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620 | <Statistics_hsp-len>0</Statistics_hsp-len> |
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621 | <Statistics_eff-space>0</Statistics_eff-space> |
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622 | <Statistics_kappa>0.711</Statistics_kappa> |
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623 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
624 | <Statistics_entropy>1.31</Statistics_entropy> |
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625 | </Statistics> |
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626 | </Iteration_stat> |
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627 | </Iteration> |
---|
628 | <Iteration> |
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629 | <Iteration_iter-num>15</Iteration_iter-num> |
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630 | <Iteration_query-ID>lcl|15_0</Iteration_query-ID> |
---|
631 | <Iteration_query-def>14_0.666667</Iteration_query-def> |
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632 | <Iteration_query-len>30</Iteration_query-len> |
---|
633 | <Iteration_hits> |
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634 | <Hit> |
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635 | <Hit_num>1</Hit_num> |
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636 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
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637 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
638 | <Hit_accession>0</Hit_accession> |
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639 | <Hit_len>5528445</Hit_len> |
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640 | <Hit_hsps> |
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641 | <Hsp> |
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642 | <Hsp_num>1</Hsp_num> |
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643 | <Hsp_bit-score>59.96</Hsp_bit-score> |
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644 | <Hsp_score>30</Hsp_score> |
---|
645 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
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646 | <Hsp_query-from>1</Hsp_query-from> |
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647 | <Hsp_query-to>30</Hsp_query-to> |
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648 | <Hsp_hit-from>4626492</Hsp_hit-from> |
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649 | <Hsp_hit-to>4626521</Hsp_hit-to> |
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650 | <Hsp_query-frame>1</Hsp_query-frame> |
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651 | <Hsp_hit-frame>1</Hsp_hit-frame> |
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652 | <Hsp_identity>30</Hsp_identity> |
---|
653 | <Hsp_positive>30</Hsp_positive> |
---|
654 | <Hsp_align-len>30</Hsp_align-len> |
---|
655 | <Hsp_qseq>ACCCCGATATCGTCGCAGGCGTTGCCGCAC</Hsp_qseq> |
---|
656 | <Hsp_hseq>ACCCCGATATCGTCGCAGGCGTTGCCGCAC</Hsp_hseq> |
---|
657 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
658 | </Hsp> |
---|
659 | </Hit_hsps> |
---|
660 | </Hit> |
---|
661 | </Iteration_hits> |
---|
662 | <Iteration_stat> |
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663 | <Statistics> |
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664 | <Statistics_db-num>1</Statistics_db-num> |
---|
665 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
666 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
667 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
668 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
669 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
670 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
671 | </Statistics> |
---|
672 | </Iteration_stat> |
---|
673 | </Iteration> |
---|
674 | <Iteration> |
---|
675 | <Iteration_iter-num>16</Iteration_iter-num> |
---|
676 | <Iteration_query-ID>lcl|16_0</Iteration_query-ID> |
---|
677 | <Iteration_query-def>15_0.666667</Iteration_query-def> |
---|
678 | <Iteration_query-len>30</Iteration_query-len> |
---|
679 | <Iteration_hits> |
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680 | <Hit> |
---|
681 | <Hit_num>1</Hit_num> |
---|
682 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
683 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
684 | <Hit_accession>0</Hit_accession> |
---|
685 | <Hit_len>5528445</Hit_len> |
---|
686 | <Hit_hsps> |
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687 | <Hsp> |
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688 | <Hsp_num>1</Hsp_num> |
---|
689 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
690 | <Hsp_score>30</Hsp_score> |
---|
691 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
692 | <Hsp_query-from>1</Hsp_query-from> |
---|
693 | <Hsp_query-to>30</Hsp_query-to> |
---|
694 | <Hsp_hit-from>346897</Hsp_hit-from> |
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695 | <Hsp_hit-to>346926</Hsp_hit-to> |
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696 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
697 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
698 | <Hsp_identity>30</Hsp_identity> |
---|
699 | <Hsp_positive>30</Hsp_positive> |
---|
700 | <Hsp_align-len>30</Hsp_align-len> |
---|
701 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
702 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
703 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
704 | </Hsp> |
---|
705 | <Hsp> |
---|
706 | <Hsp_num>2</Hsp_num> |
---|
707 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
708 | <Hsp_score>30</Hsp_score> |
---|
709 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
710 | <Hsp_query-from>30</Hsp_query-from> |
---|
711 | <Hsp_query-to>1</Hsp_query-to> |
---|
712 | <Hsp_hit-from>1466536</Hsp_hit-from> |
---|
713 | <Hsp_hit-to>1466565</Hsp_hit-to> |
---|
714 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
715 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
716 | <Hsp_identity>30</Hsp_identity> |
---|
717 | <Hsp_positive>30</Hsp_positive> |
---|
718 | <Hsp_align-len>30</Hsp_align-len> |
---|
719 | <Hsp_qseq>GAAGCGCCTCTTCCAGCGGAGACAGCAGCC</Hsp_qseq> |
---|
720 | <Hsp_hseq>GAAGCGCCTCTTCCAGCGGAGACAGCAGCC</Hsp_hseq> |
---|
721 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
722 | </Hsp> |
---|
723 | <Hsp> |
---|
724 | <Hsp_num>3</Hsp_num> |
---|
725 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
726 | <Hsp_score>30</Hsp_score> |
---|
727 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
728 | <Hsp_query-from>1</Hsp_query-from> |
---|
729 | <Hsp_query-to>30</Hsp_query-to> |
---|
730 | <Hsp_hit-from>1750132</Hsp_hit-from> |
---|
731 | <Hsp_hit-to>1750161</Hsp_hit-to> |
---|
732 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
733 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
734 | <Hsp_identity>30</Hsp_identity> |
---|
735 | <Hsp_positive>30</Hsp_positive> |
---|
736 | <Hsp_align-len>30</Hsp_align-len> |
---|
737 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
738 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
739 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
740 | </Hsp> |
---|
741 | <Hsp> |
---|
742 | <Hsp_num>4</Hsp_num> |
---|
743 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
744 | <Hsp_score>30</Hsp_score> |
---|
745 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
746 | <Hsp_query-from>1</Hsp_query-from> |
---|
747 | <Hsp_query-to>30</Hsp_query-to> |
---|
748 | <Hsp_hit-from>1908046</Hsp_hit-from> |
---|
749 | <Hsp_hit-to>1908075</Hsp_hit-to> |
---|
750 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
751 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
752 | <Hsp_identity>30</Hsp_identity> |
---|
753 | <Hsp_positive>30</Hsp_positive> |
---|
754 | <Hsp_align-len>30</Hsp_align-len> |
---|
755 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
756 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
757 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
758 | </Hsp> |
---|
759 | <Hsp> |
---|
760 | <Hsp_num>5</Hsp_num> |
---|
761 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
762 | <Hsp_score>30</Hsp_score> |
---|
763 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
764 | <Hsp_query-from>1</Hsp_query-from> |
---|
765 | <Hsp_query-to>30</Hsp_query-to> |
---|
766 | <Hsp_hit-from>2279107</Hsp_hit-from> |
---|
767 | <Hsp_hit-to>2279136</Hsp_hit-to> |
---|
768 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
769 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
770 | <Hsp_identity>30</Hsp_identity> |
---|
771 | <Hsp_positive>30</Hsp_positive> |
---|
772 | <Hsp_align-len>30</Hsp_align-len> |
---|
773 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
774 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
775 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
776 | </Hsp> |
---|
777 | <Hsp> |
---|
778 | <Hsp_num>6</Hsp_num> |
---|
779 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
780 | <Hsp_score>30</Hsp_score> |
---|
781 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
782 | <Hsp_query-from>1</Hsp_query-from> |
---|
783 | <Hsp_query-to>30</Hsp_query-to> |
---|
784 | <Hsp_hit-from>2813407</Hsp_hit-from> |
---|
785 | <Hsp_hit-to>2813436</Hsp_hit-to> |
---|
786 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
787 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
788 | <Hsp_identity>30</Hsp_identity> |
---|
789 | <Hsp_positive>30</Hsp_positive> |
---|
790 | <Hsp_align-len>30</Hsp_align-len> |
---|
791 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
792 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
793 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
794 | </Hsp> |
---|
795 | <Hsp> |
---|
796 | <Hsp_num>7</Hsp_num> |
---|
797 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
798 | <Hsp_score>30</Hsp_score> |
---|
799 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
800 | <Hsp_query-from>1</Hsp_query-from> |
---|
801 | <Hsp_query-to>30</Hsp_query-to> |
---|
802 | <Hsp_hit-from>3939162</Hsp_hit-from> |
---|
803 | <Hsp_hit-to>3939191</Hsp_hit-to> |
---|
804 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
805 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
806 | <Hsp_identity>30</Hsp_identity> |
---|
807 | <Hsp_positive>30</Hsp_positive> |
---|
808 | <Hsp_align-len>30</Hsp_align-len> |
---|
809 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
810 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
811 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
812 | </Hsp> |
---|
813 | <Hsp> |
---|
814 | <Hsp_num>8</Hsp_num> |
---|
815 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
816 | <Hsp_score>30</Hsp_score> |
---|
817 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
818 | <Hsp_query-from>1</Hsp_query-from> |
---|
819 | <Hsp_query-to>30</Hsp_query-to> |
---|
820 | <Hsp_hit-from>4656510</Hsp_hit-from> |
---|
821 | <Hsp_hit-to>4656539</Hsp_hit-to> |
---|
822 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
823 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
824 | <Hsp_identity>30</Hsp_identity> |
---|
825 | <Hsp_positive>30</Hsp_positive> |
---|
826 | <Hsp_align-len>30</Hsp_align-len> |
---|
827 | <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> |
---|
828 | <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> |
---|
829 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
830 | </Hsp> |
---|
831 | </Hit_hsps> |
---|
832 | </Hit> |
---|
833 | </Iteration_hits> |
---|
834 | <Iteration_stat> |
---|
835 | <Statistics> |
---|
836 | <Statistics_db-num>1</Statistics_db-num> |
---|
837 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
838 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
839 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
840 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
841 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
842 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
843 | </Statistics> |
---|
844 | </Iteration_stat> |
---|
845 | </Iteration> |
---|
846 | <Iteration> |
---|
847 | <Iteration_iter-num>17</Iteration_iter-num> |
---|
848 | <Iteration_query-ID>lcl|17_0</Iteration_query-ID> |
---|
849 | <Iteration_query-def>16_0.566667</Iteration_query-def> |
---|
850 | <Iteration_query-len>30</Iteration_query-len> |
---|
851 | <Iteration_hits> |
---|
852 | <Hit> |
---|
853 | <Hit_num>1</Hit_num> |
---|
854 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
855 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
856 | <Hit_accession>0</Hit_accession> |
---|
857 | <Hit_len>5528445</Hit_len> |
---|
858 | <Hit_hsps> |
---|
859 | <Hsp> |
---|
860 | <Hsp_num>1</Hsp_num> |
---|
861 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
862 | <Hsp_score>30</Hsp_score> |
---|
863 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
864 | <Hsp_query-from>1</Hsp_query-from> |
---|
865 | <Hsp_query-to>30</Hsp_query-to> |
---|
866 | <Hsp_hit-from>2595157</Hsp_hit-from> |
---|
867 | <Hsp_hit-to>2595186</Hsp_hit-to> |
---|
868 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
869 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
870 | <Hsp_identity>30</Hsp_identity> |
---|
871 | <Hsp_positive>30</Hsp_positive> |
---|
872 | <Hsp_align-len>30</Hsp_align-len> |
---|
873 | <Hsp_qseq>ATGTCCTGATCGAGCGGCGTTTTACCGACC</Hsp_qseq> |
---|
874 | <Hsp_hseq>ATGTCCTGATCGAGCGGCGTTTTACCGACC</Hsp_hseq> |
---|
875 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
876 | </Hsp> |
---|
877 | </Hit_hsps> |
---|
878 | </Hit> |
---|
879 | </Iteration_hits> |
---|
880 | <Iteration_stat> |
---|
881 | <Statistics> |
---|
882 | <Statistics_db-num>1</Statistics_db-num> |
---|
883 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
884 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
885 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
886 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
887 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
888 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
889 | </Statistics> |
---|
890 | </Iteration_stat> |
---|
891 | </Iteration> |
---|
892 | <Iteration> |
---|
893 | <Iteration_iter-num>18</Iteration_iter-num> |
---|
894 | <Iteration_query-ID>lcl|18_0</Iteration_query-ID> |
---|
895 | <Iteration_query-def>17_0.533333</Iteration_query-def> |
---|
896 | <Iteration_query-len>30</Iteration_query-len> |
---|
897 | <Iteration_hits> |
---|
898 | <Hit> |
---|
899 | <Hit_num>1</Hit_num> |
---|
900 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
901 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
902 | <Hit_accession>0</Hit_accession> |
---|
903 | <Hit_len>5528445</Hit_len> |
---|
904 | <Hit_hsps> |
---|
905 | <Hsp> |
---|
906 | <Hsp_num>1</Hsp_num> |
---|
907 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
908 | <Hsp_score>30</Hsp_score> |
---|
909 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
910 | <Hsp_query-from>1</Hsp_query-from> |
---|
911 | <Hsp_query-to>30</Hsp_query-to> |
---|
912 | <Hsp_hit-from>717743</Hsp_hit-from> |
---|
913 | <Hsp_hit-to>717772</Hsp_hit-to> |
---|
914 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
915 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
916 | <Hsp_identity>30</Hsp_identity> |
---|
917 | <Hsp_positive>30</Hsp_positive> |
---|
918 | <Hsp_align-len>30</Hsp_align-len> |
---|
919 | <Hsp_qseq>GGTGTTGAGTGTCCAGGTAATACGCTCTCG</Hsp_qseq> |
---|
920 | <Hsp_hseq>GGTGTTGAGTGTCCAGGTAATACGCTCTCG</Hsp_hseq> |
---|
921 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
922 | </Hsp> |
---|
923 | </Hit_hsps> |
---|
924 | </Hit> |
---|
925 | </Iteration_hits> |
---|
926 | <Iteration_stat> |
---|
927 | <Statistics> |
---|
928 | <Statistics_db-num>1</Statistics_db-num> |
---|
929 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
930 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
931 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
932 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
933 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
934 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
935 | </Statistics> |
---|
936 | </Iteration_stat> |
---|
937 | </Iteration> |
---|
938 | <Iteration> |
---|
939 | <Iteration_iter-num>20</Iteration_iter-num> |
---|
940 | <Iteration_query-ID>lcl|20_0</Iteration_query-ID> |
---|
941 | <Iteration_query-def>19_0.566667</Iteration_query-def> |
---|
942 | <Iteration_query-len>30</Iteration_query-len> |
---|
943 | <Iteration_hits> |
---|
944 | <Hit> |
---|
945 | <Hit_num>1</Hit_num> |
---|
946 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
947 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
948 | <Hit_accession>0</Hit_accession> |
---|
949 | <Hit_len>5528445</Hit_len> |
---|
950 | <Hit_hsps> |
---|
951 | <Hsp> |
---|
952 | <Hsp_num>1</Hsp_num> |
---|
953 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
954 | <Hsp_score>30</Hsp_score> |
---|
955 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
956 | <Hsp_query-from>1</Hsp_query-from> |
---|
957 | <Hsp_query-to>30</Hsp_query-to> |
---|
958 | <Hsp_hit-from>1237938</Hsp_hit-from> |
---|
959 | <Hsp_hit-to>1237967</Hsp_hit-to> |
---|
960 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
961 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
962 | <Hsp_identity>30</Hsp_identity> |
---|
963 | <Hsp_positive>30</Hsp_positive> |
---|
964 | <Hsp_align-len>30</Hsp_align-len> |
---|
965 | <Hsp_qseq>GTTGTAAGCGTCAGAACCGATGCGGTCGGT</Hsp_qseq> |
---|
966 | <Hsp_hseq>GTTGTAAGCGTCAGAACCGATGCGGTCGGT</Hsp_hseq> |
---|
967 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
968 | </Hsp> |
---|
969 | </Hit_hsps> |
---|
970 | </Hit> |
---|
971 | </Iteration_hits> |
---|
972 | <Iteration_stat> |
---|
973 | <Statistics> |
---|
974 | <Statistics_db-num>1</Statistics_db-num> |
---|
975 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
976 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
977 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
978 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
979 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
980 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
981 | </Statistics> |
---|
982 | </Iteration_stat> |
---|
983 | </Iteration> |
---|
984 | <Iteration> |
---|
985 | <Iteration_iter-num>21</Iteration_iter-num> |
---|
986 | <Iteration_query-ID>lcl|21_0</Iteration_query-ID> |
---|
987 | <Iteration_query-def>20_0.566667</Iteration_query-def> |
---|
988 | <Iteration_query-len>30</Iteration_query-len> |
---|
989 | <Iteration_hits> |
---|
990 | <Hit> |
---|
991 | <Hit_num>1</Hit_num> |
---|
992 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
993 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
994 | <Hit_accession>0</Hit_accession> |
---|
995 | <Hit_len>5528445</Hit_len> |
---|
996 | <Hit_hsps> |
---|
997 | <Hsp> |
---|
998 | <Hsp_num>1</Hsp_num> |
---|
999 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1000 | <Hsp_score>30</Hsp_score> |
---|
1001 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1002 | <Hsp_query-from>1</Hsp_query-from> |
---|
1003 | <Hsp_query-to>30</Hsp_query-to> |
---|
1004 | <Hsp_hit-from>4792054</Hsp_hit-from> |
---|
1005 | <Hsp_hit-to>4792083</Hsp_hit-to> |
---|
1006 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1007 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1008 | <Hsp_identity>30</Hsp_identity> |
---|
1009 | <Hsp_positive>30</Hsp_positive> |
---|
1010 | <Hsp_align-len>30</Hsp_align-len> |
---|
1011 | <Hsp_qseq>CGACATCCTGTAGGCTGGCTTCAATGCGAC</Hsp_qseq> |
---|
1012 | <Hsp_hseq>CGACATCCTGTAGGCTGGCTTCAATGCGAC</Hsp_hseq> |
---|
1013 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1014 | </Hsp> |
---|
1015 | </Hit_hsps> |
---|
1016 | </Hit> |
---|
1017 | </Iteration_hits> |
---|
1018 | <Iteration_stat> |
---|
1019 | <Statistics> |
---|
1020 | <Statistics_db-num>1</Statistics_db-num> |
---|
1021 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1022 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1023 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1024 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1025 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1026 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1027 | </Statistics> |
---|
1028 | </Iteration_stat> |
---|
1029 | </Iteration> |
---|
1030 | <Iteration> |
---|
1031 | <Iteration_iter-num>22</Iteration_iter-num> |
---|
1032 | <Iteration_query-ID>lcl|22_0</Iteration_query-ID> |
---|
1033 | <Iteration_query-def>21_0.733333</Iteration_query-def> |
---|
1034 | <Iteration_query-len>30</Iteration_query-len> |
---|
1035 | <Iteration_hits> |
---|
1036 | <Hit> |
---|
1037 | <Hit_num>1</Hit_num> |
---|
1038 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1039 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1040 | <Hit_accession>0</Hit_accession> |
---|
1041 | <Hit_len>5528445</Hit_len> |
---|
1042 | <Hit_hsps> |
---|
1043 | <Hsp> |
---|
1044 | <Hsp_num>1</Hsp_num> |
---|
1045 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1046 | <Hsp_score>30</Hsp_score> |
---|
1047 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1048 | <Hsp_query-from>1</Hsp_query-from> |
---|
1049 | <Hsp_query-to>30</Hsp_query-to> |
---|
1050 | <Hsp_hit-from>269757</Hsp_hit-from> |
---|
1051 | <Hsp_hit-to>269786</Hsp_hit-to> |
---|
1052 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1053 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1054 | <Hsp_identity>30</Hsp_identity> |
---|
1055 | <Hsp_positive>30</Hsp_positive> |
---|
1056 | <Hsp_align-len>30</Hsp_align-len> |
---|
1057 | <Hsp_qseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_qseq> |
---|
1058 | <Hsp_hseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_hseq> |
---|
1059 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1060 | </Hsp> |
---|
1061 | <Hsp> |
---|
1062 | <Hsp_num>2</Hsp_num> |
---|
1063 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1064 | <Hsp_score>30</Hsp_score> |
---|
1065 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1066 | <Hsp_query-from>1</Hsp_query-from> |
---|
1067 | <Hsp_query-to>30</Hsp_query-to> |
---|
1068 | <Hsp_hit-from>274007</Hsp_hit-from> |
---|
1069 | <Hsp_hit-to>274036</Hsp_hit-to> |
---|
1070 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1071 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1072 | <Hsp_identity>30</Hsp_identity> |
---|
1073 | <Hsp_positive>30</Hsp_positive> |
---|
1074 | <Hsp_align-len>30</Hsp_align-len> |
---|
1075 | <Hsp_qseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_qseq> |
---|
1076 | <Hsp_hseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_hseq> |
---|
1077 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1078 | </Hsp> |
---|
1079 | </Hit_hsps> |
---|
1080 | </Hit> |
---|
1081 | </Iteration_hits> |
---|
1082 | <Iteration_stat> |
---|
1083 | <Statistics> |
---|
1084 | <Statistics_db-num>1</Statistics_db-num> |
---|
1085 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1086 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1087 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1088 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1089 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1090 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1091 | </Statistics> |
---|
1092 | </Iteration_stat> |
---|
1093 | </Iteration> |
---|
1094 | <Iteration> |
---|
1095 | <Iteration_iter-num>23</Iteration_iter-num> |
---|
1096 | <Iteration_query-ID>lcl|23_0</Iteration_query-ID> |
---|
1097 | <Iteration_query-def>22_0.566667</Iteration_query-def> |
---|
1098 | <Iteration_query-len>30</Iteration_query-len> |
---|
1099 | <Iteration_hits> |
---|
1100 | <Hit> |
---|
1101 | <Hit_num>1</Hit_num> |
---|
1102 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1103 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1104 | <Hit_accession>0</Hit_accession> |
---|
1105 | <Hit_len>5528445</Hit_len> |
---|
1106 | <Hit_hsps> |
---|
1107 | <Hsp> |
---|
1108 | <Hsp_num>1</Hsp_num> |
---|
1109 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1110 | <Hsp_score>30</Hsp_score> |
---|
1111 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1112 | <Hsp_query-from>1</Hsp_query-from> |
---|
1113 | <Hsp_query-to>30</Hsp_query-to> |
---|
1114 | <Hsp_hit-from>2706426</Hsp_hit-from> |
---|
1115 | <Hsp_hit-to>2706455</Hsp_hit-to> |
---|
1116 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1117 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1118 | <Hsp_identity>30</Hsp_identity> |
---|
1119 | <Hsp_positive>30</Hsp_positive> |
---|
1120 | <Hsp_align-len>30</Hsp_align-len> |
---|
1121 | <Hsp_qseq>CGGTATTCCTCAGTTCTCGCTGCATGCCTG</Hsp_qseq> |
---|
1122 | <Hsp_hseq>CGGTATTCCTCAGTTCTCGCTGCATGCCTG</Hsp_hseq> |
---|
1123 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1124 | </Hsp> |
---|
1125 | </Hit_hsps> |
---|
1126 | </Hit> |
---|
1127 | </Iteration_hits> |
---|
1128 | <Iteration_stat> |
---|
1129 | <Statistics> |
---|
1130 | <Statistics_db-num>1</Statistics_db-num> |
---|
1131 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1132 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1133 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1134 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1135 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1136 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1137 | </Statistics> |
---|
1138 | </Iteration_stat> |
---|
1139 | </Iteration> |
---|
1140 | <Iteration> |
---|
1141 | <Iteration_iter-num>24</Iteration_iter-num> |
---|
1142 | <Iteration_query-ID>lcl|24_0</Iteration_query-ID> |
---|
1143 | <Iteration_query-def>23_0.600000</Iteration_query-def> |
---|
1144 | <Iteration_query-len>30</Iteration_query-len> |
---|
1145 | <Iteration_hits> |
---|
1146 | <Hit> |
---|
1147 | <Hit_num>1</Hit_num> |
---|
1148 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1149 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1150 | <Hit_accession>0</Hit_accession> |
---|
1151 | <Hit_len>5528445</Hit_len> |
---|
1152 | <Hit_hsps> |
---|
1153 | <Hsp> |
---|
1154 | <Hsp_num>1</Hsp_num> |
---|
1155 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1156 | <Hsp_score>30</Hsp_score> |
---|
1157 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1158 | <Hsp_query-from>1</Hsp_query-from> |
---|
1159 | <Hsp_query-to>30</Hsp_query-to> |
---|
1160 | <Hsp_hit-from>1512107</Hsp_hit-from> |
---|
1161 | <Hsp_hit-to>1512136</Hsp_hit-to> |
---|
1162 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1163 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1164 | <Hsp_identity>30</Hsp_identity> |
---|
1165 | <Hsp_positive>30</Hsp_positive> |
---|
1166 | <Hsp_align-len>30</Hsp_align-len> |
---|
1167 | <Hsp_qseq>TTGCCGTTACGCACCACGCCTTCAGTAGCG</Hsp_qseq> |
---|
1168 | <Hsp_hseq>TTGCCGTTACGCACCACGCCTTCAGTAGCG</Hsp_hseq> |
---|
1169 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1170 | </Hsp> |
---|
1171 | </Hit_hsps> |
---|
1172 | </Hit> |
---|
1173 | </Iteration_hits> |
---|
1174 | <Iteration_stat> |
---|
1175 | <Statistics> |
---|
1176 | <Statistics_db-num>1</Statistics_db-num> |
---|
1177 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1178 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1179 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1180 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1181 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1182 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1183 | </Statistics> |
---|
1184 | </Iteration_stat> |
---|
1185 | </Iteration> |
---|
1186 | <Iteration> |
---|
1187 | <Iteration_iter-num>25</Iteration_iter-num> |
---|
1188 | <Iteration_query-ID>lcl|25_0</Iteration_query-ID> |
---|
1189 | <Iteration_query-def>24_0.733333</Iteration_query-def> |
---|
1190 | <Iteration_query-len>30</Iteration_query-len> |
---|
1191 | <Iteration_hits> |
---|
1192 | <Hit> |
---|
1193 | <Hit_num>1</Hit_num> |
---|
1194 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1195 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1196 | <Hit_accession>0</Hit_accession> |
---|
1197 | <Hit_len>5528445</Hit_len> |
---|
1198 | <Hit_hsps> |
---|
1199 | <Hsp> |
---|
1200 | <Hsp_num>1</Hsp_num> |
---|
1201 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1202 | <Hsp_score>30</Hsp_score> |
---|
1203 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1204 | <Hsp_query-from>1</Hsp_query-from> |
---|
1205 | <Hsp_query-to>30</Hsp_query-to> |
---|
1206 | <Hsp_hit-from>2032108</Hsp_hit-from> |
---|
1207 | <Hsp_hit-to>2032137</Hsp_hit-to> |
---|
1208 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1209 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1210 | <Hsp_identity>30</Hsp_identity> |
---|
1211 | <Hsp_positive>30</Hsp_positive> |
---|
1212 | <Hsp_align-len>30</Hsp_align-len> |
---|
1213 | <Hsp_qseq>CGCGGGCGCACCACGTCGCTGCTGCTGTTC</Hsp_qseq> |
---|
1214 | <Hsp_hseq>CGCGGGCGCACCACGTCGCTGCTGCTGTTC</Hsp_hseq> |
---|
1215 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1216 | </Hsp> |
---|
1217 | </Hit_hsps> |
---|
1218 | </Hit> |
---|
1219 | </Iteration_hits> |
---|
1220 | <Iteration_stat> |
---|
1221 | <Statistics> |
---|
1222 | <Statistics_db-num>1</Statistics_db-num> |
---|
1223 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1224 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1225 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1226 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1227 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1228 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1229 | </Statistics> |
---|
1230 | </Iteration_stat> |
---|
1231 | </Iteration> |
---|
1232 | <Iteration> |
---|
1233 | <Iteration_iter-num>26</Iteration_iter-num> |
---|
1234 | <Iteration_query-ID>lcl|26_0</Iteration_query-ID> |
---|
1235 | <Iteration_query-def>25_0.266667</Iteration_query-def> |
---|
1236 | <Iteration_query-len>30</Iteration_query-len> |
---|
1237 | <Iteration_hits> |
---|
1238 | <Hit> |
---|
1239 | <Hit_num>1</Hit_num> |
---|
1240 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1241 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1242 | <Hit_accession>0</Hit_accession> |
---|
1243 | <Hit_len>5528445</Hit_len> |
---|
1244 | <Hit_hsps> |
---|
1245 | <Hsp> |
---|
1246 | <Hsp_num>1</Hsp_num> |
---|
1247 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1248 | <Hsp_score>30</Hsp_score> |
---|
1249 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1250 | <Hsp_query-from>1</Hsp_query-from> |
---|
1251 | <Hsp_query-to>30</Hsp_query-to> |
---|
1252 | <Hsp_hit-from>1343811</Hsp_hit-from> |
---|
1253 | <Hsp_hit-to>1343840</Hsp_hit-to> |
---|
1254 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1255 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1256 | <Hsp_identity>30</Hsp_identity> |
---|
1257 | <Hsp_positive>30</Hsp_positive> |
---|
1258 | <Hsp_align-len>30</Hsp_align-len> |
---|
1259 | <Hsp_qseq>TTTTGGGAAAACTAAATACGCATCAAAAAT</Hsp_qseq> |
---|
1260 | <Hsp_hseq>TTTTGGGAAAACTAAATACGCATCAAAAAT</Hsp_hseq> |
---|
1261 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1262 | </Hsp> |
---|
1263 | </Hit_hsps> |
---|
1264 | </Hit> |
---|
1265 | </Iteration_hits> |
---|
1266 | <Iteration_stat> |
---|
1267 | <Statistics> |
---|
1268 | <Statistics_db-num>1</Statistics_db-num> |
---|
1269 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1270 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1271 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1272 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1273 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1274 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1275 | </Statistics> |
---|
1276 | </Iteration_stat> |
---|
1277 | </Iteration> |
---|
1278 | <Iteration> |
---|
1279 | <Iteration_iter-num>27</Iteration_iter-num> |
---|
1280 | <Iteration_query-ID>lcl|27_0</Iteration_query-ID> |
---|
1281 | <Iteration_query-def>26_0.566667</Iteration_query-def> |
---|
1282 | <Iteration_query-len>30</Iteration_query-len> |
---|
1283 | <Iteration_hits> |
---|
1284 | <Hit> |
---|
1285 | <Hit_num>1</Hit_num> |
---|
1286 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1287 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1288 | <Hit_accession>0</Hit_accession> |
---|
1289 | <Hit_len>5528445</Hit_len> |
---|
1290 | <Hit_hsps> |
---|
1291 | <Hsp> |
---|
1292 | <Hsp_num>1</Hsp_num> |
---|
1293 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1294 | <Hsp_score>30</Hsp_score> |
---|
1295 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1296 | <Hsp_query-from>1</Hsp_query-from> |
---|
1297 | <Hsp_query-to>30</Hsp_query-to> |
---|
1298 | <Hsp_hit-from>3112551</Hsp_hit-from> |
---|
1299 | <Hsp_hit-to>3112580</Hsp_hit-to> |
---|
1300 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1301 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1302 | <Hsp_identity>30</Hsp_identity> |
---|
1303 | <Hsp_positive>30</Hsp_positive> |
---|
1304 | <Hsp_align-len>30</Hsp_align-len> |
---|
1305 | <Hsp_qseq>CAACGAGGCGCTACCGAGTTGTTCAATGCG</Hsp_qseq> |
---|
1306 | <Hsp_hseq>CAACGAGGCGCTACCGAGTTGTTCAATGCG</Hsp_hseq> |
---|
1307 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1308 | </Hsp> |
---|
1309 | </Hit_hsps> |
---|
1310 | </Hit> |
---|
1311 | </Iteration_hits> |
---|
1312 | <Iteration_stat> |
---|
1313 | <Statistics> |
---|
1314 | <Statistics_db-num>1</Statistics_db-num> |
---|
1315 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1316 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1317 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1318 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1319 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1320 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1321 | </Statistics> |
---|
1322 | </Iteration_stat> |
---|
1323 | </Iteration> |
---|
1324 | <Iteration> |
---|
1325 | <Iteration_iter-num>29</Iteration_iter-num> |
---|
1326 | <Iteration_query-ID>lcl|29_0</Iteration_query-ID> |
---|
1327 | <Iteration_query-def>28_0.666667</Iteration_query-def> |
---|
1328 | <Iteration_query-len>30</Iteration_query-len> |
---|
1329 | <Iteration_hits> |
---|
1330 | <Hit> |
---|
1331 | <Hit_num>1</Hit_num> |
---|
1332 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1333 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1334 | <Hit_accession>0</Hit_accession> |
---|
1335 | <Hit_len>5528445</Hit_len> |
---|
1336 | <Hit_hsps> |
---|
1337 | <Hsp> |
---|
1338 | <Hsp_num>1</Hsp_num> |
---|
1339 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1340 | <Hsp_score>30</Hsp_score> |
---|
1341 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1342 | <Hsp_query-from>1</Hsp_query-from> |
---|
1343 | <Hsp_query-to>30</Hsp_query-to> |
---|
1344 | <Hsp_hit-from>4405442</Hsp_hit-from> |
---|
1345 | <Hsp_hit-to>4405471</Hsp_hit-to> |
---|
1346 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1347 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1348 | <Hsp_identity>30</Hsp_identity> |
---|
1349 | <Hsp_positive>30</Hsp_positive> |
---|
1350 | <Hsp_align-len>30</Hsp_align-len> |
---|
1351 | <Hsp_qseq>CGCTCAATCTGCTCGCGCCTGGCTGGCGTT</Hsp_qseq> |
---|
1352 | <Hsp_hseq>CGCTCAATCTGCTCGCGCCTGGCTGGCGTT</Hsp_hseq> |
---|
1353 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1354 | </Hsp> |
---|
1355 | </Hit_hsps> |
---|
1356 | </Hit> |
---|
1357 | </Iteration_hits> |
---|
1358 | <Iteration_stat> |
---|
1359 | <Statistics> |
---|
1360 | <Statistics_db-num>1</Statistics_db-num> |
---|
1361 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1362 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1363 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1364 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1365 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1366 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1367 | </Statistics> |
---|
1368 | </Iteration_stat> |
---|
1369 | </Iteration> |
---|
1370 | <Iteration> |
---|
1371 | <Iteration_iter-num>30</Iteration_iter-num> |
---|
1372 | <Iteration_query-ID>lcl|30_0</Iteration_query-ID> |
---|
1373 | <Iteration_query-def>29_0.700000</Iteration_query-def> |
---|
1374 | <Iteration_query-len>30</Iteration_query-len> |
---|
1375 | <Iteration_hits> |
---|
1376 | <Hit> |
---|
1377 | <Hit_num>1</Hit_num> |
---|
1378 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1379 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1380 | <Hit_accession>0</Hit_accession> |
---|
1381 | <Hit_len>5528445</Hit_len> |
---|
1382 | <Hit_hsps> |
---|
1383 | <Hsp> |
---|
1384 | <Hsp_num>1</Hsp_num> |
---|
1385 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1386 | <Hsp_score>30</Hsp_score> |
---|
1387 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1388 | <Hsp_query-from>1</Hsp_query-from> |
---|
1389 | <Hsp_query-to>30</Hsp_query-to> |
---|
1390 | <Hsp_hit-from>3600547</Hsp_hit-from> |
---|
1391 | <Hsp_hit-to>3600576</Hsp_hit-to> |
---|
1392 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1393 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1394 | <Hsp_identity>30</Hsp_identity> |
---|
1395 | <Hsp_positive>30</Hsp_positive> |
---|
1396 | <Hsp_align-len>30</Hsp_align-len> |
---|
1397 | <Hsp_qseq>CTCGTCCGGCGGGCGGTTTTGCCGACAAGG</Hsp_qseq> |
---|
1398 | <Hsp_hseq>CTCGTCCGGCGGGCGGTTTTGCCGACAAGG</Hsp_hseq> |
---|
1399 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1400 | </Hsp> |
---|
1401 | </Hit_hsps> |
---|
1402 | </Hit> |
---|
1403 | </Iteration_hits> |
---|
1404 | <Iteration_stat> |
---|
1405 | <Statistics> |
---|
1406 | <Statistics_db-num>1</Statistics_db-num> |
---|
1407 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1408 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1409 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1410 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1411 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1412 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1413 | </Statistics> |
---|
1414 | </Iteration_stat> |
---|
1415 | </Iteration> |
---|
1416 | <Iteration> |
---|
1417 | <Iteration_iter-num>33</Iteration_iter-num> |
---|
1418 | <Iteration_query-ID>lcl|33_0</Iteration_query-ID> |
---|
1419 | <Iteration_query-def>32_0.600000</Iteration_query-def> |
---|
1420 | <Iteration_query-len>30</Iteration_query-len> |
---|
1421 | <Iteration_hits> |
---|
1422 | <Hit> |
---|
1423 | <Hit_num>1</Hit_num> |
---|
1424 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1425 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1426 | <Hit_accession>0</Hit_accession> |
---|
1427 | <Hit_len>5528445</Hit_len> |
---|
1428 | <Hit_hsps> |
---|
1429 | <Hsp> |
---|
1430 | <Hsp_num>1</Hsp_num> |
---|
1431 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1432 | <Hsp_score>30</Hsp_score> |
---|
1433 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1434 | <Hsp_query-from>1</Hsp_query-from> |
---|
1435 | <Hsp_query-to>30</Hsp_query-to> |
---|
1436 | <Hsp_hit-from>1435670</Hsp_hit-from> |
---|
1437 | <Hsp_hit-to>1435699</Hsp_hit-to> |
---|
1438 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1439 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1440 | <Hsp_identity>30</Hsp_identity> |
---|
1441 | <Hsp_positive>30</Hsp_positive> |
---|
1442 | <Hsp_align-len>30</Hsp_align-len> |
---|
1443 | <Hsp_qseq>TGAGGATGGTCCTCTGACTCTGCAGGCGCA</Hsp_qseq> |
---|
1444 | <Hsp_hseq>TGAGGATGGTCCTCTGACTCTGCAGGCGCA</Hsp_hseq> |
---|
1445 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1446 | </Hsp> |
---|
1447 | </Hit_hsps> |
---|
1448 | </Hit> |
---|
1449 | </Iteration_hits> |
---|
1450 | <Iteration_stat> |
---|
1451 | <Statistics> |
---|
1452 | <Statistics_db-num>1</Statistics_db-num> |
---|
1453 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1454 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1455 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1456 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1457 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1458 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1459 | </Statistics> |
---|
1460 | </Iteration_stat> |
---|
1461 | </Iteration> |
---|
1462 | <Iteration> |
---|
1463 | <Iteration_iter-num>34</Iteration_iter-num> |
---|
1464 | <Iteration_query-ID>lcl|34_0</Iteration_query-ID> |
---|
1465 | <Iteration_query-def>33_0.300000</Iteration_query-def> |
---|
1466 | <Iteration_query-len>30</Iteration_query-len> |
---|
1467 | <Iteration_hits> |
---|
1468 | <Hit> |
---|
1469 | <Hit_num>1</Hit_num> |
---|
1470 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1471 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1472 | <Hit_accession>0</Hit_accession> |
---|
1473 | <Hit_len>5528445</Hit_len> |
---|
1474 | <Hit_hsps> |
---|
1475 | <Hsp> |
---|
1476 | <Hsp_num>1</Hsp_num> |
---|
1477 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1478 | <Hsp_score>30</Hsp_score> |
---|
1479 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1480 | <Hsp_query-from>1</Hsp_query-from> |
---|
1481 | <Hsp_query-to>30</Hsp_query-to> |
---|
1482 | <Hsp_hit-from>3788178</Hsp_hit-from> |
---|
1483 | <Hsp_hit-to>3788207</Hsp_hit-to> |
---|
1484 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1485 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1486 | <Hsp_identity>30</Hsp_identity> |
---|
1487 | <Hsp_positive>30</Hsp_positive> |
---|
1488 | <Hsp_align-len>30</Hsp_align-len> |
---|
1489 | <Hsp_qseq>TAGTAACCCTTTAATAAGATTGTCGATTAG</Hsp_qseq> |
---|
1490 | <Hsp_hseq>TAGTAACCCTTTAATAAGATTGTCGATTAG</Hsp_hseq> |
---|
1491 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1492 | </Hsp> |
---|
1493 | </Hit_hsps> |
---|
1494 | </Hit> |
---|
1495 | </Iteration_hits> |
---|
1496 | <Iteration_stat> |
---|
1497 | <Statistics> |
---|
1498 | <Statistics_db-num>1</Statistics_db-num> |
---|
1499 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1500 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1501 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1502 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1503 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1504 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1505 | </Statistics> |
---|
1506 | </Iteration_stat> |
---|
1507 | </Iteration> |
---|
1508 | <Iteration> |
---|
1509 | <Iteration_iter-num>35</Iteration_iter-num> |
---|
1510 | <Iteration_query-ID>lcl|35_0</Iteration_query-ID> |
---|
1511 | <Iteration_query-def>34_0.533333</Iteration_query-def> |
---|
1512 | <Iteration_query-len>30</Iteration_query-len> |
---|
1513 | <Iteration_hits> |
---|
1514 | <Hit> |
---|
1515 | <Hit_num>1</Hit_num> |
---|
1516 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1517 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1518 | <Hit_accession>0</Hit_accession> |
---|
1519 | <Hit_len>5528445</Hit_len> |
---|
1520 | <Hit_hsps> |
---|
1521 | <Hsp> |
---|
1522 | <Hsp_num>1</Hsp_num> |
---|
1523 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1524 | <Hsp_score>30</Hsp_score> |
---|
1525 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1526 | <Hsp_query-from>1</Hsp_query-from> |
---|
1527 | <Hsp_query-to>30</Hsp_query-to> |
---|
1528 | <Hsp_hit-from>484499</Hsp_hit-from> |
---|
1529 | <Hsp_hit-to>484528</Hsp_hit-to> |
---|
1530 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1531 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1532 | <Hsp_identity>30</Hsp_identity> |
---|
1533 | <Hsp_positive>30</Hsp_positive> |
---|
1534 | <Hsp_align-len>30</Hsp_align-len> |
---|
1535 | <Hsp_qseq>TGATGTTAAATGCATGGCACCTGCCGGTGC</Hsp_qseq> |
---|
1536 | <Hsp_hseq>TGATGTTAAATGCATGGCACCTGCCGGTGC</Hsp_hseq> |
---|
1537 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1538 | </Hsp> |
---|
1539 | </Hit_hsps> |
---|
1540 | </Hit> |
---|
1541 | </Iteration_hits> |
---|
1542 | <Iteration_stat> |
---|
1543 | <Statistics> |
---|
1544 | <Statistics_db-num>1</Statistics_db-num> |
---|
1545 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1546 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1547 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1548 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1549 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1550 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1551 | </Statistics> |
---|
1552 | </Iteration_stat> |
---|
1553 | </Iteration> |
---|
1554 | <Iteration> |
---|
1555 | <Iteration_iter-num>36</Iteration_iter-num> |
---|
1556 | <Iteration_query-ID>lcl|36_0</Iteration_query-ID> |
---|
1557 | <Iteration_query-def>35_0.466667</Iteration_query-def> |
---|
1558 | <Iteration_query-len>30</Iteration_query-len> |
---|
1559 | <Iteration_hits> |
---|
1560 | <Hit> |
---|
1561 | <Hit_num>1</Hit_num> |
---|
1562 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1563 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1564 | <Hit_accession>0</Hit_accession> |
---|
1565 | <Hit_len>5528445</Hit_len> |
---|
1566 | <Hit_hsps> |
---|
1567 | <Hsp> |
---|
1568 | <Hsp_num>1</Hsp_num> |
---|
1569 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1570 | <Hsp_score>30</Hsp_score> |
---|
1571 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1572 | <Hsp_query-from>1</Hsp_query-from> |
---|
1573 | <Hsp_query-to>30</Hsp_query-to> |
---|
1574 | <Hsp_hit-from>2250064</Hsp_hit-from> |
---|
1575 | <Hsp_hit-to>2250093</Hsp_hit-to> |
---|
1576 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1577 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1578 | <Hsp_identity>30</Hsp_identity> |
---|
1579 | <Hsp_positive>30</Hsp_positive> |
---|
1580 | <Hsp_align-len>30</Hsp_align-len> |
---|
1581 | <Hsp_qseq>ACTGCTTTGCCGAGATATTCGAGGTTAACC</Hsp_qseq> |
---|
1582 | <Hsp_hseq>ACTGCTTTGCCGAGATATTCGAGGTTAACC</Hsp_hseq> |
---|
1583 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1584 | </Hsp> |
---|
1585 | </Hit_hsps> |
---|
1586 | </Hit> |
---|
1587 | </Iteration_hits> |
---|
1588 | <Iteration_stat> |
---|
1589 | <Statistics> |
---|
1590 | <Statistics_db-num>1</Statistics_db-num> |
---|
1591 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1592 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1593 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1594 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1595 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1596 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1597 | </Statistics> |
---|
1598 | </Iteration_stat> |
---|
1599 | </Iteration> |
---|
1600 | <Iteration> |
---|
1601 | <Iteration_iter-num>37</Iteration_iter-num> |
---|
1602 | <Iteration_query-ID>lcl|37_0</Iteration_query-ID> |
---|
1603 | <Iteration_query-def>36_0.433333</Iteration_query-def> |
---|
1604 | <Iteration_query-len>30</Iteration_query-len> |
---|
1605 | <Iteration_hits> |
---|
1606 | <Hit> |
---|
1607 | <Hit_num>1</Hit_num> |
---|
1608 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1609 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1610 | <Hit_accession>0</Hit_accession> |
---|
1611 | <Hit_len>5528445</Hit_len> |
---|
1612 | <Hit_hsps> |
---|
1613 | <Hsp> |
---|
1614 | <Hsp_num>1</Hsp_num> |
---|
1615 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1616 | <Hsp_score>30</Hsp_score> |
---|
1617 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1618 | <Hsp_query-from>1</Hsp_query-from> |
---|
1619 | <Hsp_query-to>30</Hsp_query-to> |
---|
1620 | <Hsp_hit-from>3698178</Hsp_hit-from> |
---|
1621 | <Hsp_hit-to>3698207</Hsp_hit-to> |
---|
1622 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1623 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1624 | <Hsp_identity>30</Hsp_identity> |
---|
1625 | <Hsp_positive>30</Hsp_positive> |
---|
1626 | <Hsp_align-len>30</Hsp_align-len> |
---|
1627 | <Hsp_qseq>TGTTGGCAACATGGCGAGCGTAATCAATTA</Hsp_qseq> |
---|
1628 | <Hsp_hseq>TGTTGGCAACATGGCGAGCGTAATCAATTA</Hsp_hseq> |
---|
1629 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1630 | </Hsp> |
---|
1631 | </Hit_hsps> |
---|
1632 | </Hit> |
---|
1633 | </Iteration_hits> |
---|
1634 | <Iteration_stat> |
---|
1635 | <Statistics> |
---|
1636 | <Statistics_db-num>1</Statistics_db-num> |
---|
1637 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1638 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1639 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1640 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1641 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1642 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1643 | </Statistics> |
---|
1644 | </Iteration_stat> |
---|
1645 | </Iteration> |
---|
1646 | <Iteration> |
---|
1647 | <Iteration_iter-num>39</Iteration_iter-num> |
---|
1648 | <Iteration_query-ID>lcl|39_0</Iteration_query-ID> |
---|
1649 | <Iteration_query-def>38_0.533333</Iteration_query-def> |
---|
1650 | <Iteration_query-len>30</Iteration_query-len> |
---|
1651 | <Iteration_hits> |
---|
1652 | <Hit> |
---|
1653 | <Hit_num>1</Hit_num> |
---|
1654 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1655 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1656 | <Hit_accession>0</Hit_accession> |
---|
1657 | <Hit_len>5528445</Hit_len> |
---|
1658 | <Hit_hsps> |
---|
1659 | <Hsp> |
---|
1660 | <Hsp_num>1</Hsp_num> |
---|
1661 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1662 | <Hsp_score>30</Hsp_score> |
---|
1663 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1664 | <Hsp_query-from>1</Hsp_query-from> |
---|
1665 | <Hsp_query-to>30</Hsp_query-to> |
---|
1666 | <Hsp_hit-from>4242501</Hsp_hit-from> |
---|
1667 | <Hsp_hit-to>4242530</Hsp_hit-to> |
---|
1668 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1669 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1670 | <Hsp_identity>30</Hsp_identity> |
---|
1671 | <Hsp_positive>30</Hsp_positive> |
---|
1672 | <Hsp_align-len>30</Hsp_align-len> |
---|
1673 | <Hsp_qseq>GCAGCAGGATCGGATCGAACTCTGGTTTCT</Hsp_qseq> |
---|
1674 | <Hsp_hseq>GCAGCAGGATCGGATCGAACTCTGGTTTCT</Hsp_hseq> |
---|
1675 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1676 | </Hsp> |
---|
1677 | </Hit_hsps> |
---|
1678 | </Hit> |
---|
1679 | </Iteration_hits> |
---|
1680 | <Iteration_stat> |
---|
1681 | <Statistics> |
---|
1682 | <Statistics_db-num>1</Statistics_db-num> |
---|
1683 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1684 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1685 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1686 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1687 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1688 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1689 | </Statistics> |
---|
1690 | </Iteration_stat> |
---|
1691 | </Iteration> |
---|
1692 | <Iteration> |
---|
1693 | <Iteration_iter-num>40</Iteration_iter-num> |
---|
1694 | <Iteration_query-ID>lcl|40_0</Iteration_query-ID> |
---|
1695 | <Iteration_query-def>39_0.400000</Iteration_query-def> |
---|
1696 | <Iteration_query-len>30</Iteration_query-len> |
---|
1697 | <Iteration_hits> |
---|
1698 | <Hit> |
---|
1699 | <Hit_num>1</Hit_num> |
---|
1700 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1701 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1702 | <Hit_accession>0</Hit_accession> |
---|
1703 | <Hit_len>5528445</Hit_len> |
---|
1704 | <Hit_hsps> |
---|
1705 | <Hsp> |
---|
1706 | <Hsp_num>1</Hsp_num> |
---|
1707 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1708 | <Hsp_score>30</Hsp_score> |
---|
1709 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1710 | <Hsp_query-from>1</Hsp_query-from> |
---|
1711 | <Hsp_query-to>30</Hsp_query-to> |
---|
1712 | <Hsp_hit-from>3683151</Hsp_hit-from> |
---|
1713 | <Hsp_hit-to>3683180</Hsp_hit-to> |
---|
1714 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1715 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1716 | <Hsp_identity>30</Hsp_identity> |
---|
1717 | <Hsp_positive>30</Hsp_positive> |
---|
1718 | <Hsp_align-len>30</Hsp_align-len> |
---|
1719 | <Hsp_qseq>TAATGCGGCATTCTCCTGATTTATTGTCAC</Hsp_qseq> |
---|
1720 | <Hsp_hseq>TAATGCGGCATTCTCCTGATTTATTGTCAC</Hsp_hseq> |
---|
1721 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1722 | </Hsp> |
---|
1723 | </Hit_hsps> |
---|
1724 | </Hit> |
---|
1725 | </Iteration_hits> |
---|
1726 | <Iteration_stat> |
---|
1727 | <Statistics> |
---|
1728 | <Statistics_db-num>1</Statistics_db-num> |
---|
1729 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1730 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1731 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1732 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1733 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1734 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1735 | </Statistics> |
---|
1736 | </Iteration_stat> |
---|
1737 | </Iteration> |
---|
1738 | <Iteration> |
---|
1739 | <Iteration_iter-num>42</Iteration_iter-num> |
---|
1740 | <Iteration_query-ID>lcl|42_0</Iteration_query-ID> |
---|
1741 | <Iteration_query-def>41_0.566667</Iteration_query-def> |
---|
1742 | <Iteration_query-len>30</Iteration_query-len> |
---|
1743 | <Iteration_hits> |
---|
1744 | <Hit> |
---|
1745 | <Hit_num>1</Hit_num> |
---|
1746 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1747 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1748 | <Hit_accession>0</Hit_accession> |
---|
1749 | <Hit_len>5528445</Hit_len> |
---|
1750 | <Hit_hsps> |
---|
1751 | <Hsp> |
---|
1752 | <Hsp_num>1</Hsp_num> |
---|
1753 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1754 | <Hsp_score>30</Hsp_score> |
---|
1755 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1756 | <Hsp_query-from>1</Hsp_query-from> |
---|
1757 | <Hsp_query-to>30</Hsp_query-to> |
---|
1758 | <Hsp_hit-from>789086</Hsp_hit-from> |
---|
1759 | <Hsp_hit-to>789115</Hsp_hit-to> |
---|
1760 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1761 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1762 | <Hsp_identity>30</Hsp_identity> |
---|
1763 | <Hsp_positive>30</Hsp_positive> |
---|
1764 | <Hsp_align-len>30</Hsp_align-len> |
---|
1765 | <Hsp_qseq>AGCTGACGGTCAGCAGGGATACTTCCTGCA</Hsp_qseq> |
---|
1766 | <Hsp_hseq>AGCTGACGGTCAGCAGGGATACTTCCTGCA</Hsp_hseq> |
---|
1767 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1768 | </Hsp> |
---|
1769 | </Hit_hsps> |
---|
1770 | </Hit> |
---|
1771 | </Iteration_hits> |
---|
1772 | <Iteration_stat> |
---|
1773 | <Statistics> |
---|
1774 | <Statistics_db-num>1</Statistics_db-num> |
---|
1775 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1776 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1777 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1778 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1779 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1780 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1781 | </Statistics> |
---|
1782 | </Iteration_stat> |
---|
1783 | </Iteration> |
---|
1784 | <Iteration> |
---|
1785 | <Iteration_iter-num>43</Iteration_iter-num> |
---|
1786 | <Iteration_query-ID>lcl|43_0</Iteration_query-ID> |
---|
1787 | <Iteration_query-def>42_0.566667</Iteration_query-def> |
---|
1788 | <Iteration_query-len>30</Iteration_query-len> |
---|
1789 | <Iteration_hits> |
---|
1790 | <Hit> |
---|
1791 | <Hit_num>1</Hit_num> |
---|
1792 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1793 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1794 | <Hit_accession>0</Hit_accession> |
---|
1795 | <Hit_len>5528445</Hit_len> |
---|
1796 | <Hit_hsps> |
---|
1797 | <Hsp> |
---|
1798 | <Hsp_num>1</Hsp_num> |
---|
1799 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1800 | <Hsp_score>30</Hsp_score> |
---|
1801 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1802 | <Hsp_query-from>1</Hsp_query-from> |
---|
1803 | <Hsp_query-to>30</Hsp_query-to> |
---|
1804 | <Hsp_hit-from>1714771</Hsp_hit-from> |
---|
1805 | <Hsp_hit-to>1714800</Hsp_hit-to> |
---|
1806 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1807 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1808 | <Hsp_identity>30</Hsp_identity> |
---|
1809 | <Hsp_positive>30</Hsp_positive> |
---|
1810 | <Hsp_align-len>30</Hsp_align-len> |
---|
1811 | <Hsp_qseq>GCAGTGACTACATCCGCGAGGTGAATGTGG</Hsp_qseq> |
---|
1812 | <Hsp_hseq>GCAGTGACTACATCCGCGAGGTGAATGTGG</Hsp_hseq> |
---|
1813 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1814 | </Hsp> |
---|
1815 | </Hit_hsps> |
---|
1816 | </Hit> |
---|
1817 | </Iteration_hits> |
---|
1818 | <Iteration_stat> |
---|
1819 | <Statistics> |
---|
1820 | <Statistics_db-num>1</Statistics_db-num> |
---|
1821 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1822 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1823 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1824 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1825 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1826 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1827 | </Statistics> |
---|
1828 | </Iteration_stat> |
---|
1829 | </Iteration> |
---|
1830 | <Iteration> |
---|
1831 | <Iteration_iter-num>44</Iteration_iter-num> |
---|
1832 | <Iteration_query-ID>lcl|44_0</Iteration_query-ID> |
---|
1833 | <Iteration_query-def>43_0.466667</Iteration_query-def> |
---|
1834 | <Iteration_query-len>30</Iteration_query-len> |
---|
1835 | <Iteration_hits> |
---|
1836 | <Hit> |
---|
1837 | <Hit_num>1</Hit_num> |
---|
1838 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1839 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1840 | <Hit_accession>0</Hit_accession> |
---|
1841 | <Hit_len>5528445</Hit_len> |
---|
1842 | <Hit_hsps> |
---|
1843 | <Hsp> |
---|
1844 | <Hsp_num>1</Hsp_num> |
---|
1845 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1846 | <Hsp_score>30</Hsp_score> |
---|
1847 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1848 | <Hsp_query-from>1</Hsp_query-from> |
---|
1849 | <Hsp_query-to>30</Hsp_query-to> |
---|
1850 | <Hsp_hit-from>4272582</Hsp_hit-from> |
---|
1851 | <Hsp_hit-to>4272611</Hsp_hit-to> |
---|
1852 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1853 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1854 | <Hsp_identity>30</Hsp_identity> |
---|
1855 | <Hsp_positive>30</Hsp_positive> |
---|
1856 | <Hsp_align-len>30</Hsp_align-len> |
---|
1857 | <Hsp_qseq>GCTTTTTCCAGCATCAACGCCACTGAACAA</Hsp_qseq> |
---|
1858 | <Hsp_hseq>GCTTTTTCCAGCATCAACGCCACTGAACAA</Hsp_hseq> |
---|
1859 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1860 | </Hsp> |
---|
1861 | </Hit_hsps> |
---|
1862 | </Hit> |
---|
1863 | </Iteration_hits> |
---|
1864 | <Iteration_stat> |
---|
1865 | <Statistics> |
---|
1866 | <Statistics_db-num>1</Statistics_db-num> |
---|
1867 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1868 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1869 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1870 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1871 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1872 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1873 | </Statistics> |
---|
1874 | </Iteration_stat> |
---|
1875 | </Iteration> |
---|
1876 | <Iteration> |
---|
1877 | <Iteration_iter-num>45</Iteration_iter-num> |
---|
1878 | <Iteration_query-ID>lcl|45_0</Iteration_query-ID> |
---|
1879 | <Iteration_query-def>44_0.433333</Iteration_query-def> |
---|
1880 | <Iteration_query-len>30</Iteration_query-len> |
---|
1881 | <Iteration_hits> |
---|
1882 | <Hit> |
---|
1883 | <Hit_num>1</Hit_num> |
---|
1884 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1885 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1886 | <Hit_accession>0</Hit_accession> |
---|
1887 | <Hit_len>5528445</Hit_len> |
---|
1888 | <Hit_hsps> |
---|
1889 | <Hsp> |
---|
1890 | <Hsp_num>1</Hsp_num> |
---|
1891 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1892 | <Hsp_score>30</Hsp_score> |
---|
1893 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1894 | <Hsp_query-from>1</Hsp_query-from> |
---|
1895 | <Hsp_query-to>30</Hsp_query-to> |
---|
1896 | <Hsp_hit-from>5481023</Hsp_hit-from> |
---|
1897 | <Hsp_hit-to>5481052</Hsp_hit-to> |
---|
1898 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1899 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1900 | <Hsp_identity>30</Hsp_identity> |
---|
1901 | <Hsp_positive>30</Hsp_positive> |
---|
1902 | <Hsp_align-len>30</Hsp_align-len> |
---|
1903 | <Hsp_qseq>AAAGTGGTAGATAACGTGGTGCAGACTATG</Hsp_qseq> |
---|
1904 | <Hsp_hseq>AAAGTGGTAGATAACGTGGTGCAGACTATG</Hsp_hseq> |
---|
1905 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1906 | </Hsp> |
---|
1907 | </Hit_hsps> |
---|
1908 | </Hit> |
---|
1909 | </Iteration_hits> |
---|
1910 | <Iteration_stat> |
---|
1911 | <Statistics> |
---|
1912 | <Statistics_db-num>1</Statistics_db-num> |
---|
1913 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
1914 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
1915 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
1916 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
1917 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
1918 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
1919 | </Statistics> |
---|
1920 | </Iteration_stat> |
---|
1921 | </Iteration> |
---|
1922 | <Iteration> |
---|
1923 | <Iteration_iter-num>46</Iteration_iter-num> |
---|
1924 | <Iteration_query-ID>lcl|46_0</Iteration_query-ID> |
---|
1925 | <Iteration_query-def>45_0.500000</Iteration_query-def> |
---|
1926 | <Iteration_query-len>30</Iteration_query-len> |
---|
1927 | <Iteration_hits> |
---|
1928 | <Hit> |
---|
1929 | <Hit_num>1</Hit_num> |
---|
1930 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
1931 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
1932 | <Hit_accession>0</Hit_accession> |
---|
1933 | <Hit_len>5528445</Hit_len> |
---|
1934 | <Hit_hsps> |
---|
1935 | <Hsp> |
---|
1936 | <Hsp_num>1</Hsp_num> |
---|
1937 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1938 | <Hsp_score>30</Hsp_score> |
---|
1939 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1940 | <Hsp_query-from>30</Hsp_query-from> |
---|
1941 | <Hsp_query-to>1</Hsp_query-to> |
---|
1942 | <Hsp_hit-from>1271829</Hsp_hit-from> |
---|
1943 | <Hsp_hit-to>1271858</Hsp_hit-to> |
---|
1944 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1945 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
1946 | <Hsp_identity>30</Hsp_identity> |
---|
1947 | <Hsp_positive>30</Hsp_positive> |
---|
1948 | <Hsp_align-len>30</Hsp_align-len> |
---|
1949 | <Hsp_qseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_qseq> |
---|
1950 | <Hsp_hseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_hseq> |
---|
1951 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1952 | </Hsp> |
---|
1953 | <Hsp> |
---|
1954 | <Hsp_num>2</Hsp_num> |
---|
1955 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1956 | <Hsp_score>30</Hsp_score> |
---|
1957 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1958 | <Hsp_query-from>30</Hsp_query-from> |
---|
1959 | <Hsp_query-to>1</Hsp_query-to> |
---|
1960 | <Hsp_hit-from>1357952</Hsp_hit-from> |
---|
1961 | <Hsp_hit-to>1357981</Hsp_hit-to> |
---|
1962 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1963 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
1964 | <Hsp_identity>30</Hsp_identity> |
---|
1965 | <Hsp_positive>30</Hsp_positive> |
---|
1966 | <Hsp_align-len>30</Hsp_align-len> |
---|
1967 | <Hsp_qseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_qseq> |
---|
1968 | <Hsp_hseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_hseq> |
---|
1969 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1970 | </Hsp> |
---|
1971 | <Hsp> |
---|
1972 | <Hsp_num>3</Hsp_num> |
---|
1973 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1974 | <Hsp_score>30</Hsp_score> |
---|
1975 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1976 | <Hsp_query-from>1</Hsp_query-from> |
---|
1977 | <Hsp_query-to>30</Hsp_query-to> |
---|
1978 | <Hsp_hit-from>2310674</Hsp_hit-from> |
---|
1979 | <Hsp_hit-to>2310703</Hsp_hit-to> |
---|
1980 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1981 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
1982 | <Hsp_identity>30</Hsp_identity> |
---|
1983 | <Hsp_positive>30</Hsp_positive> |
---|
1984 | <Hsp_align-len>30</Hsp_align-len> |
---|
1985 | <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq> |
---|
1986 | <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq> |
---|
1987 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
1988 | </Hsp> |
---|
1989 | <Hsp> |
---|
1990 | <Hsp_num>4</Hsp_num> |
---|
1991 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
1992 | <Hsp_score>30</Hsp_score> |
---|
1993 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
1994 | <Hsp_query-from>1</Hsp_query-from> |
---|
1995 | <Hsp_query-to>30</Hsp_query-to> |
---|
1996 | <Hsp_hit-from>2769319</Hsp_hit-from> |
---|
1997 | <Hsp_hit-to>2769348</Hsp_hit-to> |
---|
1998 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
1999 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2000 | <Hsp_identity>30</Hsp_identity> |
---|
2001 | <Hsp_positive>30</Hsp_positive> |
---|
2002 | <Hsp_align-len>30</Hsp_align-len> |
---|
2003 | <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq> |
---|
2004 | <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq> |
---|
2005 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2006 | </Hsp> |
---|
2007 | <Hsp> |
---|
2008 | <Hsp_num>5</Hsp_num> |
---|
2009 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2010 | <Hsp_score>30</Hsp_score> |
---|
2011 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2012 | <Hsp_query-from>1</Hsp_query-from> |
---|
2013 | <Hsp_query-to>30</Hsp_query-to> |
---|
2014 | <Hsp_hit-from>2991293</Hsp_hit-from> |
---|
2015 | <Hsp_hit-to>2991322</Hsp_hit-to> |
---|
2016 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2017 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2018 | <Hsp_identity>30</Hsp_identity> |
---|
2019 | <Hsp_positive>30</Hsp_positive> |
---|
2020 | <Hsp_align-len>30</Hsp_align-len> |
---|
2021 | <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq> |
---|
2022 | <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq> |
---|
2023 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2024 | </Hsp> |
---|
2025 | </Hit_hsps> |
---|
2026 | </Hit> |
---|
2027 | </Iteration_hits> |
---|
2028 | <Iteration_stat> |
---|
2029 | <Statistics> |
---|
2030 | <Statistics_db-num>1</Statistics_db-num> |
---|
2031 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2032 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2033 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2034 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2035 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2036 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2037 | </Statistics> |
---|
2038 | </Iteration_stat> |
---|
2039 | </Iteration> |
---|
2040 | <Iteration> |
---|
2041 | <Iteration_iter-num>47</Iteration_iter-num> |
---|
2042 | <Iteration_query-ID>lcl|47_0</Iteration_query-ID> |
---|
2043 | <Iteration_query-def>46_0.466667</Iteration_query-def> |
---|
2044 | <Iteration_query-len>30</Iteration_query-len> |
---|
2045 | <Iteration_hits> |
---|
2046 | <Hit> |
---|
2047 | <Hit_num>1</Hit_num> |
---|
2048 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2049 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2050 | <Hit_accession>0</Hit_accession> |
---|
2051 | <Hit_len>5528445</Hit_len> |
---|
2052 | <Hit_hsps> |
---|
2053 | <Hsp> |
---|
2054 | <Hsp_num>1</Hsp_num> |
---|
2055 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2056 | <Hsp_score>30</Hsp_score> |
---|
2057 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2058 | <Hsp_query-from>1</Hsp_query-from> |
---|
2059 | <Hsp_query-to>30</Hsp_query-to> |
---|
2060 | <Hsp_hit-from>1080570</Hsp_hit-from> |
---|
2061 | <Hsp_hit-to>1080599</Hsp_hit-to> |
---|
2062 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2063 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2064 | <Hsp_identity>30</Hsp_identity> |
---|
2065 | <Hsp_positive>30</Hsp_positive> |
---|
2066 | <Hsp_align-len>30</Hsp_align-len> |
---|
2067 | <Hsp_qseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_qseq> |
---|
2068 | <Hsp_hseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_hseq> |
---|
2069 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2070 | </Hsp> |
---|
2071 | <Hsp> |
---|
2072 | <Hsp_num>2</Hsp_num> |
---|
2073 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2074 | <Hsp_score>30</Hsp_score> |
---|
2075 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2076 | <Hsp_query-from>1</Hsp_query-from> |
---|
2077 | <Hsp_query-to>30</Hsp_query-to> |
---|
2078 | <Hsp_hit-from>1476177</Hsp_hit-from> |
---|
2079 | <Hsp_hit-to>1476206</Hsp_hit-to> |
---|
2080 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2081 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2082 | <Hsp_identity>30</Hsp_identity> |
---|
2083 | <Hsp_positive>30</Hsp_positive> |
---|
2084 | <Hsp_align-len>30</Hsp_align-len> |
---|
2085 | <Hsp_qseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_qseq> |
---|
2086 | <Hsp_hseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_hseq> |
---|
2087 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2088 | </Hsp> |
---|
2089 | </Hit_hsps> |
---|
2090 | </Hit> |
---|
2091 | </Iteration_hits> |
---|
2092 | <Iteration_stat> |
---|
2093 | <Statistics> |
---|
2094 | <Statistics_db-num>1</Statistics_db-num> |
---|
2095 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2096 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2097 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2098 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2099 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2100 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2101 | </Statistics> |
---|
2102 | </Iteration_stat> |
---|
2103 | </Iteration> |
---|
2104 | <Iteration> |
---|
2105 | <Iteration_iter-num>48</Iteration_iter-num> |
---|
2106 | <Iteration_query-ID>lcl|48_0</Iteration_query-ID> |
---|
2107 | <Iteration_query-def>47_0.533333</Iteration_query-def> |
---|
2108 | <Iteration_query-len>30</Iteration_query-len> |
---|
2109 | <Iteration_hits> |
---|
2110 | <Hit> |
---|
2111 | <Hit_num>1</Hit_num> |
---|
2112 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2113 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2114 | <Hit_accession>0</Hit_accession> |
---|
2115 | <Hit_len>5528445</Hit_len> |
---|
2116 | <Hit_hsps> |
---|
2117 | <Hsp> |
---|
2118 | <Hsp_num>1</Hsp_num> |
---|
2119 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2120 | <Hsp_score>30</Hsp_score> |
---|
2121 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2122 | <Hsp_query-from>1</Hsp_query-from> |
---|
2123 | <Hsp_query-to>30</Hsp_query-to> |
---|
2124 | <Hsp_hit-from>2887871</Hsp_hit-from> |
---|
2125 | <Hsp_hit-to>2887900</Hsp_hit-to> |
---|
2126 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2127 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2128 | <Hsp_identity>30</Hsp_identity> |
---|
2129 | <Hsp_positive>30</Hsp_positive> |
---|
2130 | <Hsp_align-len>30</Hsp_align-len> |
---|
2131 | <Hsp_qseq>ACAATGCAACCAGACCAGCCCGGATCGATA</Hsp_qseq> |
---|
2132 | <Hsp_hseq>ACAATGCAACCAGACCAGCCCGGATCGATA</Hsp_hseq> |
---|
2133 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2134 | </Hsp> |
---|
2135 | </Hit_hsps> |
---|
2136 | </Hit> |
---|
2137 | </Iteration_hits> |
---|
2138 | <Iteration_stat> |
---|
2139 | <Statistics> |
---|
2140 | <Statistics_db-num>1</Statistics_db-num> |
---|
2141 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2142 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2143 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2144 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2145 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2146 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2147 | </Statistics> |
---|
2148 | </Iteration_stat> |
---|
2149 | </Iteration> |
---|
2150 | <Iteration> |
---|
2151 | <Iteration_iter-num>50</Iteration_iter-num> |
---|
2152 | <Iteration_query-ID>lcl|50_0</Iteration_query-ID> |
---|
2153 | <Iteration_query-def>49_0.433333</Iteration_query-def> |
---|
2154 | <Iteration_query-len>30</Iteration_query-len> |
---|
2155 | <Iteration_hits> |
---|
2156 | <Hit> |
---|
2157 | <Hit_num>1</Hit_num> |
---|
2158 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2159 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2160 | <Hit_accession>0</Hit_accession> |
---|
2161 | <Hit_len>5528445</Hit_len> |
---|
2162 | <Hit_hsps> |
---|
2163 | <Hsp> |
---|
2164 | <Hsp_num>1</Hsp_num> |
---|
2165 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2166 | <Hsp_score>30</Hsp_score> |
---|
2167 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2168 | <Hsp_query-from>1</Hsp_query-from> |
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2169 | <Hsp_query-to>30</Hsp_query-to> |
---|
2170 | <Hsp_hit-from>4152853</Hsp_hit-from> |
---|
2171 | <Hsp_hit-to>4152882</Hsp_hit-to> |
---|
2172 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2173 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2174 | <Hsp_identity>30</Hsp_identity> |
---|
2175 | <Hsp_positive>30</Hsp_positive> |
---|
2176 | <Hsp_align-len>30</Hsp_align-len> |
---|
2177 | <Hsp_qseq>CGTTATACGGAACAACATTTAACTCCAGCG</Hsp_qseq> |
---|
2178 | <Hsp_hseq>CGTTATACGGAACAACATTTAACTCCAGCG</Hsp_hseq> |
---|
2179 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2180 | </Hsp> |
---|
2181 | </Hit_hsps> |
---|
2182 | </Hit> |
---|
2183 | </Iteration_hits> |
---|
2184 | <Iteration_stat> |
---|
2185 | <Statistics> |
---|
2186 | <Statistics_db-num>1</Statistics_db-num> |
---|
2187 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2188 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2189 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2190 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2191 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2192 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2193 | </Statistics> |
---|
2194 | </Iteration_stat> |
---|
2195 | </Iteration> |
---|
2196 | <Iteration> |
---|
2197 | <Iteration_iter-num>51</Iteration_iter-num> |
---|
2198 | <Iteration_query-ID>lcl|51_0</Iteration_query-ID> |
---|
2199 | <Iteration_query-def>50_0.466667</Iteration_query-def> |
---|
2200 | <Iteration_query-len>30</Iteration_query-len> |
---|
2201 | <Iteration_hits> |
---|
2202 | <Hit> |
---|
2203 | <Hit_num>1</Hit_num> |
---|
2204 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2205 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2206 | <Hit_accession>0</Hit_accession> |
---|
2207 | <Hit_len>5528445</Hit_len> |
---|
2208 | <Hit_hsps> |
---|
2209 | <Hsp> |
---|
2210 | <Hsp_num>1</Hsp_num> |
---|
2211 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2212 | <Hsp_score>30</Hsp_score> |
---|
2213 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2214 | <Hsp_query-from>1</Hsp_query-from> |
---|
2215 | <Hsp_query-to>30</Hsp_query-to> |
---|
2216 | <Hsp_hit-from>3568677</Hsp_hit-from> |
---|
2217 | <Hsp_hit-to>3568706</Hsp_hit-to> |
---|
2218 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2219 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2220 | <Hsp_identity>30</Hsp_identity> |
---|
2221 | <Hsp_positive>30</Hsp_positive> |
---|
2222 | <Hsp_align-len>30</Hsp_align-len> |
---|
2223 | <Hsp_qseq>TTGCTGTTGCCATCGCTTTTCAGGACATAC</Hsp_qseq> |
---|
2224 | <Hsp_hseq>TTGCTGTTGCCATCGCTTTTCAGGACATAC</Hsp_hseq> |
---|
2225 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2226 | </Hsp> |
---|
2227 | </Hit_hsps> |
---|
2228 | </Hit> |
---|
2229 | </Iteration_hits> |
---|
2230 | <Iteration_stat> |
---|
2231 | <Statistics> |
---|
2232 | <Statistics_db-num>1</Statistics_db-num> |
---|
2233 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2234 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2235 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2236 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2237 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2238 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2239 | </Statistics> |
---|
2240 | </Iteration_stat> |
---|
2241 | </Iteration> |
---|
2242 | <Iteration> |
---|
2243 | <Iteration_iter-num>52</Iteration_iter-num> |
---|
2244 | <Iteration_query-ID>lcl|52_0</Iteration_query-ID> |
---|
2245 | <Iteration_query-def>51_0.533333</Iteration_query-def> |
---|
2246 | <Iteration_query-len>30</Iteration_query-len> |
---|
2247 | <Iteration_hits> |
---|
2248 | <Hit> |
---|
2249 | <Hit_num>1</Hit_num> |
---|
2250 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2251 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2252 | <Hit_accession>0</Hit_accession> |
---|
2253 | <Hit_len>5528445</Hit_len> |
---|
2254 | <Hit_hsps> |
---|
2255 | <Hsp> |
---|
2256 | <Hsp_num>1</Hsp_num> |
---|
2257 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2258 | <Hsp_score>30</Hsp_score> |
---|
2259 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2260 | <Hsp_query-from>1</Hsp_query-from> |
---|
2261 | <Hsp_query-to>30</Hsp_query-to> |
---|
2262 | <Hsp_hit-from>3739788</Hsp_hit-from> |
---|
2263 | <Hsp_hit-to>3739817</Hsp_hit-to> |
---|
2264 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2265 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2266 | <Hsp_identity>30</Hsp_identity> |
---|
2267 | <Hsp_positive>30</Hsp_positive> |
---|
2268 | <Hsp_align-len>30</Hsp_align-len> |
---|
2269 | <Hsp_qseq>CGACGGTATCGGTACGCAGATTGTGATGGA</Hsp_qseq> |
---|
2270 | <Hsp_hseq>CGACGGTATCGGTACGCAGATTGTGATGGA</Hsp_hseq> |
---|
2271 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2272 | </Hsp> |
---|
2273 | </Hit_hsps> |
---|
2274 | </Hit> |
---|
2275 | </Iteration_hits> |
---|
2276 | <Iteration_stat> |
---|
2277 | <Statistics> |
---|
2278 | <Statistics_db-num>1</Statistics_db-num> |
---|
2279 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2280 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2281 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2282 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2283 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2284 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2285 | </Statistics> |
---|
2286 | </Iteration_stat> |
---|
2287 | </Iteration> |
---|
2288 | <Iteration> |
---|
2289 | <Iteration_iter-num>53</Iteration_iter-num> |
---|
2290 | <Iteration_query-ID>lcl|53_0</Iteration_query-ID> |
---|
2291 | <Iteration_query-def>52_0.366667</Iteration_query-def> |
---|
2292 | <Iteration_query-len>30</Iteration_query-len> |
---|
2293 | <Iteration_hits> |
---|
2294 | <Hit> |
---|
2295 | <Hit_num>1</Hit_num> |
---|
2296 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2297 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2298 | <Hit_accession>0</Hit_accession> |
---|
2299 | <Hit_len>5528445</Hit_len> |
---|
2300 | <Hit_hsps> |
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2301 | <Hsp> |
---|
2302 | <Hsp_num>1</Hsp_num> |
---|
2303 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2304 | <Hsp_score>30</Hsp_score> |
---|
2305 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2306 | <Hsp_query-from>1</Hsp_query-from> |
---|
2307 | <Hsp_query-to>30</Hsp_query-to> |
---|
2308 | <Hsp_hit-from>3789407</Hsp_hit-from> |
---|
2309 | <Hsp_hit-to>3789436</Hsp_hit-to> |
---|
2310 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2311 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2312 | <Hsp_identity>30</Hsp_identity> |
---|
2313 | <Hsp_positive>30</Hsp_positive> |
---|
2314 | <Hsp_align-len>30</Hsp_align-len> |
---|
2315 | <Hsp_qseq>ATGAGCATCAACATCGAAATCTCAAACCAA</Hsp_qseq> |
---|
2316 | <Hsp_hseq>ATGAGCATCAACATCGAAATCTCAAACCAA</Hsp_hseq> |
---|
2317 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2318 | </Hsp> |
---|
2319 | </Hit_hsps> |
---|
2320 | </Hit> |
---|
2321 | </Iteration_hits> |
---|
2322 | <Iteration_stat> |
---|
2323 | <Statistics> |
---|
2324 | <Statistics_db-num>1</Statistics_db-num> |
---|
2325 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2326 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2327 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2328 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2329 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2330 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2331 | </Statistics> |
---|
2332 | </Iteration_stat> |
---|
2333 | </Iteration> |
---|
2334 | <Iteration> |
---|
2335 | <Iteration_iter-num>55</Iteration_iter-num> |
---|
2336 | <Iteration_query-ID>lcl|55_0</Iteration_query-ID> |
---|
2337 | <Iteration_query-def>54_0.400000</Iteration_query-def> |
---|
2338 | <Iteration_query-len>30</Iteration_query-len> |
---|
2339 | <Iteration_hits> |
---|
2340 | <Hit> |
---|
2341 | <Hit_num>1</Hit_num> |
---|
2342 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2343 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2344 | <Hit_accession>0</Hit_accession> |
---|
2345 | <Hit_len>5528445</Hit_len> |
---|
2346 | <Hit_hsps> |
---|
2347 | <Hsp> |
---|
2348 | <Hsp_num>1</Hsp_num> |
---|
2349 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2350 | <Hsp_score>30</Hsp_score> |
---|
2351 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2352 | <Hsp_query-from>1</Hsp_query-from> |
---|
2353 | <Hsp_query-to>30</Hsp_query-to> |
---|
2354 | <Hsp_hit-from>3161991</Hsp_hit-from> |
---|
2355 | <Hsp_hit-to>3162020</Hsp_hit-to> |
---|
2356 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2357 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2358 | <Hsp_identity>30</Hsp_identity> |
---|
2359 | <Hsp_positive>30</Hsp_positive> |
---|
2360 | <Hsp_align-len>30</Hsp_align-len> |
---|
2361 | <Hsp_qseq>GTATTCTTCATTGATTTGTAAGCGGGTACC</Hsp_qseq> |
---|
2362 | <Hsp_hseq>GTATTCTTCATTGATTTGTAAGCGGGTACC</Hsp_hseq> |
---|
2363 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2364 | </Hsp> |
---|
2365 | </Hit_hsps> |
---|
2366 | </Hit> |
---|
2367 | </Iteration_hits> |
---|
2368 | <Iteration_stat> |
---|
2369 | <Statistics> |
---|
2370 | <Statistics_db-num>1</Statistics_db-num> |
---|
2371 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2372 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2373 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2374 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2375 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2376 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2377 | </Statistics> |
---|
2378 | </Iteration_stat> |
---|
2379 | </Iteration> |
---|
2380 | <Iteration> |
---|
2381 | <Iteration_iter-num>56</Iteration_iter-num> |
---|
2382 | <Iteration_query-ID>lcl|56_0</Iteration_query-ID> |
---|
2383 | <Iteration_query-def>55_0.466667</Iteration_query-def> |
---|
2384 | <Iteration_query-len>30</Iteration_query-len> |
---|
2385 | <Iteration_hits> |
---|
2386 | <Hit> |
---|
2387 | <Hit_num>1</Hit_num> |
---|
2388 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2389 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2390 | <Hit_accession>0</Hit_accession> |
---|
2391 | <Hit_len>5528445</Hit_len> |
---|
2392 | <Hit_hsps> |
---|
2393 | <Hsp> |
---|
2394 | <Hsp_num>1</Hsp_num> |
---|
2395 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2396 | <Hsp_score>30</Hsp_score> |
---|
2397 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2398 | <Hsp_query-from>1</Hsp_query-from> |
---|
2399 | <Hsp_query-to>30</Hsp_query-to> |
---|
2400 | <Hsp_hit-from>4384753</Hsp_hit-from> |
---|
2401 | <Hsp_hit-to>4384782</Hsp_hit-to> |
---|
2402 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2403 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2404 | <Hsp_identity>30</Hsp_identity> |
---|
2405 | <Hsp_positive>30</Hsp_positive> |
---|
2406 | <Hsp_align-len>30</Hsp_align-len> |
---|
2407 | <Hsp_qseq>AAGCGCTGTTCAACATAAATTGGCTGACGG</Hsp_qseq> |
---|
2408 | <Hsp_hseq>AAGCGCTGTTCAACATAAATTGGCTGACGG</Hsp_hseq> |
---|
2409 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2410 | </Hsp> |
---|
2411 | </Hit_hsps> |
---|
2412 | </Hit> |
---|
2413 | </Iteration_hits> |
---|
2414 | <Iteration_stat> |
---|
2415 | <Statistics> |
---|
2416 | <Statistics_db-num>1</Statistics_db-num> |
---|
2417 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2418 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2419 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2420 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2421 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2422 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2423 | </Statistics> |
---|
2424 | </Iteration_stat> |
---|
2425 | </Iteration> |
---|
2426 | <Iteration> |
---|
2427 | <Iteration_iter-num>57</Iteration_iter-num> |
---|
2428 | <Iteration_query-ID>lcl|57_0</Iteration_query-ID> |
---|
2429 | <Iteration_query-def>56_0.433333</Iteration_query-def> |
---|
2430 | <Iteration_query-len>30</Iteration_query-len> |
---|
2431 | <Iteration_hits> |
---|
2432 | <Hit> |
---|
2433 | <Hit_num>1</Hit_num> |
---|
2434 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2435 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2436 | <Hit_accession>0</Hit_accession> |
---|
2437 | <Hit_len>5528445</Hit_len> |
---|
2438 | <Hit_hsps> |
---|
2439 | <Hsp> |
---|
2440 | <Hsp_num>1</Hsp_num> |
---|
2441 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2442 | <Hsp_score>30</Hsp_score> |
---|
2443 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2444 | <Hsp_query-from>1</Hsp_query-from> |
---|
2445 | <Hsp_query-to>30</Hsp_query-to> |
---|
2446 | <Hsp_hit-from>2915787</Hsp_hit-from> |
---|
2447 | <Hsp_hit-to>2915816</Hsp_hit-to> |
---|
2448 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2449 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2450 | <Hsp_identity>30</Hsp_identity> |
---|
2451 | <Hsp_positive>30</Hsp_positive> |
---|
2452 | <Hsp_align-len>30</Hsp_align-len> |
---|
2453 | <Hsp_qseq>AACCGTCAGCTCTTTACGCAATATTTTGCC</Hsp_qseq> |
---|
2454 | <Hsp_hseq>AACCGTCAGCTCTTTACGCAATATTTTGCC</Hsp_hseq> |
---|
2455 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2456 | </Hsp> |
---|
2457 | </Hit_hsps> |
---|
2458 | </Hit> |
---|
2459 | </Iteration_hits> |
---|
2460 | <Iteration_stat> |
---|
2461 | <Statistics> |
---|
2462 | <Statistics_db-num>1</Statistics_db-num> |
---|
2463 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2464 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2465 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2466 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2467 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2468 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2469 | </Statistics> |
---|
2470 | </Iteration_stat> |
---|
2471 | </Iteration> |
---|
2472 | <Iteration> |
---|
2473 | <Iteration_iter-num>58</Iteration_iter-num> |
---|
2474 | <Iteration_query-ID>lcl|58_0</Iteration_query-ID> |
---|
2475 | <Iteration_query-def>57_0.566667</Iteration_query-def> |
---|
2476 | <Iteration_query-len>30</Iteration_query-len> |
---|
2477 | <Iteration_hits> |
---|
2478 | <Hit> |
---|
2479 | <Hit_num>1</Hit_num> |
---|
2480 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2481 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2482 | <Hit_accession>0</Hit_accession> |
---|
2483 | <Hit_len>5528445</Hit_len> |
---|
2484 | <Hit_hsps> |
---|
2485 | <Hsp> |
---|
2486 | <Hsp_num>1</Hsp_num> |
---|
2487 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2488 | <Hsp_score>30</Hsp_score> |
---|
2489 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2490 | <Hsp_query-from>1</Hsp_query-from> |
---|
2491 | <Hsp_query-to>30</Hsp_query-to> |
---|
2492 | <Hsp_hit-from>294604</Hsp_hit-from> |
---|
2493 | <Hsp_hit-to>294633</Hsp_hit-to> |
---|
2494 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2495 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2496 | <Hsp_identity>30</Hsp_identity> |
---|
2497 | <Hsp_positive>30</Hsp_positive> |
---|
2498 | <Hsp_align-len>30</Hsp_align-len> |
---|
2499 | <Hsp_qseq>CGCGAAATCCTCGACGTCCAGGCACGTATT</Hsp_qseq> |
---|
2500 | <Hsp_hseq>CGCGAAATCCTCGACGTCCAGGCACGTATT</Hsp_hseq> |
---|
2501 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2502 | </Hsp> |
---|
2503 | </Hit_hsps> |
---|
2504 | </Hit> |
---|
2505 | </Iteration_hits> |
---|
2506 | <Iteration_stat> |
---|
2507 | <Statistics> |
---|
2508 | <Statistics_db-num>1</Statistics_db-num> |
---|
2509 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2510 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2511 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2512 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2513 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2514 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2515 | </Statistics> |
---|
2516 | </Iteration_stat> |
---|
2517 | </Iteration> |
---|
2518 | <Iteration> |
---|
2519 | <Iteration_iter-num>59</Iteration_iter-num> |
---|
2520 | <Iteration_query-ID>lcl|59_0</Iteration_query-ID> |
---|
2521 | <Iteration_query-def>58_0.300000</Iteration_query-def> |
---|
2522 | <Iteration_query-len>30</Iteration_query-len> |
---|
2523 | <Iteration_hits> |
---|
2524 | <Hit> |
---|
2525 | <Hit_num>1</Hit_num> |
---|
2526 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2527 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2528 | <Hit_accession>0</Hit_accession> |
---|
2529 | <Hit_len>5528445</Hit_len> |
---|
2530 | <Hit_hsps> |
---|
2531 | <Hsp> |
---|
2532 | <Hsp_num>1</Hsp_num> |
---|
2533 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2534 | <Hsp_score>30</Hsp_score> |
---|
2535 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2536 | <Hsp_query-from>1</Hsp_query-from> |
---|
2537 | <Hsp_query-to>30</Hsp_query-to> |
---|
2538 | <Hsp_hit-from>1553483</Hsp_hit-from> |
---|
2539 | <Hsp_hit-to>1553512</Hsp_hit-to> |
---|
2540 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2541 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2542 | <Hsp_identity>30</Hsp_identity> |
---|
2543 | <Hsp_positive>30</Hsp_positive> |
---|
2544 | <Hsp_align-len>30</Hsp_align-len> |
---|
2545 | <Hsp_qseq>GTTATCCATTAAAATAGATCGGATCGATAT</Hsp_qseq> |
---|
2546 | <Hsp_hseq>GTTATCCATTAAAATAGATCGGATCGATAT</Hsp_hseq> |
---|
2547 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2548 | </Hsp> |
---|
2549 | </Hit_hsps> |
---|
2550 | </Hit> |
---|
2551 | </Iteration_hits> |
---|
2552 | <Iteration_stat> |
---|
2553 | <Statistics> |
---|
2554 | <Statistics_db-num>1</Statistics_db-num> |
---|
2555 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2556 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2557 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2558 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2559 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2560 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2561 | </Statistics> |
---|
2562 | </Iteration_stat> |
---|
2563 | </Iteration> |
---|
2564 | <Iteration> |
---|
2565 | <Iteration_iter-num>60</Iteration_iter-num> |
---|
2566 | <Iteration_query-ID>lcl|60_0</Iteration_query-ID> |
---|
2567 | <Iteration_query-def>59_0.300000</Iteration_query-def> |
---|
2568 | <Iteration_query-len>30</Iteration_query-len> |
---|
2569 | <Iteration_hits> |
---|
2570 | <Hit> |
---|
2571 | <Hit_num>1</Hit_num> |
---|
2572 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2573 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2574 | <Hit_accession>0</Hit_accession> |
---|
2575 | <Hit_len>5528445</Hit_len> |
---|
2576 | <Hit_hsps> |
---|
2577 | <Hsp> |
---|
2578 | <Hsp_num>1</Hsp_num> |
---|
2579 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2580 | <Hsp_score>30</Hsp_score> |
---|
2581 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2582 | <Hsp_query-from>1</Hsp_query-from> |
---|
2583 | <Hsp_query-to>30</Hsp_query-to> |
---|
2584 | <Hsp_hit-from>1351506</Hsp_hit-from> |
---|
2585 | <Hsp_hit-to>1351535</Hsp_hit-to> |
---|
2586 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2587 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2588 | <Hsp_identity>30</Hsp_identity> |
---|
2589 | <Hsp_positive>30</Hsp_positive> |
---|
2590 | <Hsp_align-len>30</Hsp_align-len> |
---|
2591 | <Hsp_qseq>AAAATCTGCATATCATGATAAGAGTGGTTA</Hsp_qseq> |
---|
2592 | <Hsp_hseq>AAAATCTGCATATCATGATAAGAGTGGTTA</Hsp_hseq> |
---|
2593 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2594 | </Hsp> |
---|
2595 | <Hsp> |
---|
2596 | <Hsp_num>2</Hsp_num> |
---|
2597 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2598 | <Hsp_score>30</Hsp_score> |
---|
2599 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2600 | <Hsp_query-from>30</Hsp_query-from> |
---|
2601 | <Hsp_query-to>1</Hsp_query-to> |
---|
2602 | <Hsp_hit-from>2997458</Hsp_hit-from> |
---|
2603 | <Hsp_hit-to>2997487</Hsp_hit-to> |
---|
2604 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2605 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
2606 | <Hsp_identity>30</Hsp_identity> |
---|
2607 | <Hsp_positive>30</Hsp_positive> |
---|
2608 | <Hsp_align-len>30</Hsp_align-len> |
---|
2609 | <Hsp_qseq>TAACCACTCTTATCATGATATGCAGATTTT</Hsp_qseq> |
---|
2610 | <Hsp_hseq>TAACCACTCTTATCATGATATGCAGATTTT</Hsp_hseq> |
---|
2611 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2612 | </Hsp> |
---|
2613 | </Hit_hsps> |
---|
2614 | </Hit> |
---|
2615 | </Iteration_hits> |
---|
2616 | <Iteration_stat> |
---|
2617 | <Statistics> |
---|
2618 | <Statistics_db-num>1</Statistics_db-num> |
---|
2619 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2620 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2621 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2622 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2623 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2624 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2625 | </Statistics> |
---|
2626 | </Iteration_stat> |
---|
2627 | </Iteration> |
---|
2628 | <Iteration> |
---|
2629 | <Iteration_iter-num>62</Iteration_iter-num> |
---|
2630 | <Iteration_query-ID>lcl|62_0</Iteration_query-ID> |
---|
2631 | <Iteration_query-def>61_0.366667</Iteration_query-def> |
---|
2632 | <Iteration_query-len>30</Iteration_query-len> |
---|
2633 | <Iteration_hits> |
---|
2634 | <Hit> |
---|
2635 | <Hit_num>1</Hit_num> |
---|
2636 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2637 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2638 | <Hit_accession>0</Hit_accession> |
---|
2639 | <Hit_len>5528445</Hit_len> |
---|
2640 | <Hit_hsps> |
---|
2641 | <Hsp> |
---|
2642 | <Hsp_num>1</Hsp_num> |
---|
2643 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2644 | <Hsp_score>30</Hsp_score> |
---|
2645 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2646 | <Hsp_query-from>1</Hsp_query-from> |
---|
2647 | <Hsp_query-to>30</Hsp_query-to> |
---|
2648 | <Hsp_hit-from>1987157</Hsp_hit-from> |
---|
2649 | <Hsp_hit-to>1987186</Hsp_hit-to> |
---|
2650 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2651 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2652 | <Hsp_identity>30</Hsp_identity> |
---|
2653 | <Hsp_positive>30</Hsp_positive> |
---|
2654 | <Hsp_align-len>30</Hsp_align-len> |
---|
2655 | <Hsp_qseq>TCAGTTTGAAAGCTTTGTCAGCCGTTTTTT</Hsp_qseq> |
---|
2656 | <Hsp_hseq>TCAGTTTGAAAGCTTTGTCAGCCGTTTTTT</Hsp_hseq> |
---|
2657 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2658 | </Hsp> |
---|
2659 | </Hit_hsps> |
---|
2660 | </Hit> |
---|
2661 | </Iteration_hits> |
---|
2662 | <Iteration_stat> |
---|
2663 | <Statistics> |
---|
2664 | <Statistics_db-num>1</Statistics_db-num> |
---|
2665 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2666 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2667 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2668 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2669 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2670 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2671 | </Statistics> |
---|
2672 | </Iteration_stat> |
---|
2673 | </Iteration> |
---|
2674 | <Iteration> |
---|
2675 | <Iteration_iter-num>63</Iteration_iter-num> |
---|
2676 | <Iteration_query-ID>lcl|63_0</Iteration_query-ID> |
---|
2677 | <Iteration_query-def>62_0.366667</Iteration_query-def> |
---|
2678 | <Iteration_query-len>30</Iteration_query-len> |
---|
2679 | <Iteration_hits> |
---|
2680 | <Hit> |
---|
2681 | <Hit_num>1</Hit_num> |
---|
2682 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2683 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2684 | <Hit_accession>0</Hit_accession> |
---|
2685 | <Hit_len>5528445</Hit_len> |
---|
2686 | <Hit_hsps> |
---|
2687 | <Hsp> |
---|
2688 | <Hsp_num>1</Hsp_num> |
---|
2689 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2690 | <Hsp_score>30</Hsp_score> |
---|
2691 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2692 | <Hsp_query-from>1</Hsp_query-from> |
---|
2693 | <Hsp_query-to>30</Hsp_query-to> |
---|
2694 | <Hsp_hit-from>1667830</Hsp_hit-from> |
---|
2695 | <Hsp_hit-to>1667859</Hsp_hit-to> |
---|
2696 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2697 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2698 | <Hsp_identity>30</Hsp_identity> |
---|
2699 | <Hsp_positive>30</Hsp_positive> |
---|
2700 | <Hsp_align-len>30</Hsp_align-len> |
---|
2701 | <Hsp_qseq>AATCCTAAACCTAGGAATGCCAGAATATCT</Hsp_qseq> |
---|
2702 | <Hsp_hseq>AATCCTAAACCTAGGAATGCCAGAATATCT</Hsp_hseq> |
---|
2703 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2704 | </Hsp> |
---|
2705 | </Hit_hsps> |
---|
2706 | </Hit> |
---|
2707 | </Iteration_hits> |
---|
2708 | <Iteration_stat> |
---|
2709 | <Statistics> |
---|
2710 | <Statistics_db-num>1</Statistics_db-num> |
---|
2711 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2712 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2713 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2714 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2715 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2716 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2717 | </Statistics> |
---|
2718 | </Iteration_stat> |
---|
2719 | </Iteration> |
---|
2720 | <Iteration> |
---|
2721 | <Iteration_iter-num>64</Iteration_iter-num> |
---|
2722 | <Iteration_query-ID>lcl|64_0</Iteration_query-ID> |
---|
2723 | <Iteration_query-def>63_0.566667</Iteration_query-def> |
---|
2724 | <Iteration_query-len>30</Iteration_query-len> |
---|
2725 | <Iteration_hits> |
---|
2726 | <Hit> |
---|
2727 | <Hit_num>1</Hit_num> |
---|
2728 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2729 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2730 | <Hit_accession>0</Hit_accession> |
---|
2731 | <Hit_len>5528445</Hit_len> |
---|
2732 | <Hit_hsps> |
---|
2733 | <Hsp> |
---|
2734 | <Hsp_num>1</Hsp_num> |
---|
2735 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2736 | <Hsp_score>30</Hsp_score> |
---|
2737 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2738 | <Hsp_query-from>30</Hsp_query-from> |
---|
2739 | <Hsp_query-to>1</Hsp_query-to> |
---|
2740 | <Hsp_hit-from>231418</Hsp_hit-from> |
---|
2741 | <Hsp_hit-to>231447</Hsp_hit-to> |
---|
2742 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2743 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
2744 | <Hsp_identity>30</Hsp_identity> |
---|
2745 | <Hsp_positive>30</Hsp_positive> |
---|
2746 | <Hsp_align-len>30</Hsp_align-len> |
---|
2747 | <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> |
---|
2748 | <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> |
---|
2749 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2750 | </Hsp> |
---|
2751 | <Hsp> |
---|
2752 | <Hsp_num>2</Hsp_num> |
---|
2753 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2754 | <Hsp_score>30</Hsp_score> |
---|
2755 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2756 | <Hsp_query-from>1</Hsp_query-from> |
---|
2757 | <Hsp_query-to>30</Hsp_query-to> |
---|
2758 | <Hsp_hit-from>3516862</Hsp_hit-from> |
---|
2759 | <Hsp_hit-to>3516891</Hsp_hit-to> |
---|
2760 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2761 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2762 | <Hsp_identity>30</Hsp_identity> |
---|
2763 | <Hsp_positive>30</Hsp_positive> |
---|
2764 | <Hsp_align-len>30</Hsp_align-len> |
---|
2765 | <Hsp_qseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_qseq> |
---|
2766 | <Hsp_hseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_hseq> |
---|
2767 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2768 | </Hsp> |
---|
2769 | <Hsp> |
---|
2770 | <Hsp_num>3</Hsp_num> |
---|
2771 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2772 | <Hsp_score>30</Hsp_score> |
---|
2773 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2774 | <Hsp_query-from>1</Hsp_query-from> |
---|
2775 | <Hsp_query-to>30</Hsp_query-to> |
---|
2776 | <Hsp_hit-from>4226650</Hsp_hit-from> |
---|
2777 | <Hsp_hit-to>4226679</Hsp_hit-to> |
---|
2778 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2779 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2780 | <Hsp_identity>30</Hsp_identity> |
---|
2781 | <Hsp_positive>30</Hsp_positive> |
---|
2782 | <Hsp_align-len>30</Hsp_align-len> |
---|
2783 | <Hsp_qseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_qseq> |
---|
2784 | <Hsp_hseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_hseq> |
---|
2785 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2786 | </Hsp> |
---|
2787 | <Hsp> |
---|
2788 | <Hsp_num>4</Hsp_num> |
---|
2789 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2790 | <Hsp_score>30</Hsp_score> |
---|
2791 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2792 | <Hsp_query-from>30</Hsp_query-from> |
---|
2793 | <Hsp_query-to>1</Hsp_query-to> |
---|
2794 | <Hsp_hit-from>4808457</Hsp_hit-from> |
---|
2795 | <Hsp_hit-to>4808486</Hsp_hit-to> |
---|
2796 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2797 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
2798 | <Hsp_identity>30</Hsp_identity> |
---|
2799 | <Hsp_positive>30</Hsp_positive> |
---|
2800 | <Hsp_align-len>30</Hsp_align-len> |
---|
2801 | <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> |
---|
2802 | <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> |
---|
2803 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2804 | </Hsp> |
---|
2805 | <Hsp> |
---|
2806 | <Hsp_num>5</Hsp_num> |
---|
2807 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2808 | <Hsp_score>30</Hsp_score> |
---|
2809 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2810 | <Hsp_query-from>30</Hsp_query-from> |
---|
2811 | <Hsp_query-to>1</Hsp_query-to> |
---|
2812 | <Hsp_hit-from>4904735</Hsp_hit-from> |
---|
2813 | <Hsp_hit-to>4904764</Hsp_hit-to> |
---|
2814 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2815 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
2816 | <Hsp_identity>30</Hsp_identity> |
---|
2817 | <Hsp_positive>30</Hsp_positive> |
---|
2818 | <Hsp_align-len>30</Hsp_align-len> |
---|
2819 | <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> |
---|
2820 | <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> |
---|
2821 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2822 | </Hsp> |
---|
2823 | <Hsp> |
---|
2824 | <Hsp_num>6</Hsp_num> |
---|
2825 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2826 | <Hsp_score>30</Hsp_score> |
---|
2827 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2828 | <Hsp_query-from>30</Hsp_query-from> |
---|
2829 | <Hsp_query-to>1</Hsp_query-to> |
---|
2830 | <Hsp_hit-from>5048915</Hsp_hit-from> |
---|
2831 | <Hsp_hit-to>5048944</Hsp_hit-to> |
---|
2832 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2833 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
2834 | <Hsp_identity>30</Hsp_identity> |
---|
2835 | <Hsp_positive>30</Hsp_positive> |
---|
2836 | <Hsp_align-len>30</Hsp_align-len> |
---|
2837 | <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> |
---|
2838 | <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> |
---|
2839 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2840 | </Hsp> |
---|
2841 | <Hsp> |
---|
2842 | <Hsp_num>7</Hsp_num> |
---|
2843 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2844 | <Hsp_score>30</Hsp_score> |
---|
2845 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2846 | <Hsp_query-from>30</Hsp_query-from> |
---|
2847 | <Hsp_query-to>1</Hsp_query-to> |
---|
2848 | <Hsp_hit-from>5089922</Hsp_hit-from> |
---|
2849 | <Hsp_hit-to>5089951</Hsp_hit-to> |
---|
2850 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2851 | <Hsp_hit-frame>-1</Hsp_hit-frame> |
---|
2852 | <Hsp_identity>30</Hsp_identity> |
---|
2853 | <Hsp_positive>30</Hsp_positive> |
---|
2854 | <Hsp_align-len>30</Hsp_align-len> |
---|
2855 | <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> |
---|
2856 | <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> |
---|
2857 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2858 | </Hsp> |
---|
2859 | </Hit_hsps> |
---|
2860 | </Hit> |
---|
2861 | </Iteration_hits> |
---|
2862 | <Iteration_stat> |
---|
2863 | <Statistics> |
---|
2864 | <Statistics_db-num>1</Statistics_db-num> |
---|
2865 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2866 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2867 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2868 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2869 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2870 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2871 | </Statistics> |
---|
2872 | </Iteration_stat> |
---|
2873 | </Iteration> |
---|
2874 | <Iteration> |
---|
2875 | <Iteration_iter-num>65</Iteration_iter-num> |
---|
2876 | <Iteration_query-ID>lcl|65_0</Iteration_query-ID> |
---|
2877 | <Iteration_query-def>64_0.500000</Iteration_query-def> |
---|
2878 | <Iteration_query-len>30</Iteration_query-len> |
---|
2879 | <Iteration_hits> |
---|
2880 | <Hit> |
---|
2881 | <Hit_num>1</Hit_num> |
---|
2882 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2883 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2884 | <Hit_accession>0</Hit_accession> |
---|
2885 | <Hit_len>5528445</Hit_len> |
---|
2886 | <Hit_hsps> |
---|
2887 | <Hsp> |
---|
2888 | <Hsp_num>1</Hsp_num> |
---|
2889 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2890 | <Hsp_score>30</Hsp_score> |
---|
2891 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2892 | <Hsp_query-from>1</Hsp_query-from> |
---|
2893 | <Hsp_query-to>30</Hsp_query-to> |
---|
2894 | <Hsp_hit-from>5440369</Hsp_hit-from> |
---|
2895 | <Hsp_hit-to>5440398</Hsp_hit-to> |
---|
2896 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2897 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2898 | <Hsp_identity>30</Hsp_identity> |
---|
2899 | <Hsp_positive>30</Hsp_positive> |
---|
2900 | <Hsp_align-len>30</Hsp_align-len> |
---|
2901 | <Hsp_qseq>GAGATGACGGTTGCAGAGTCATGCGTTTGA</Hsp_qseq> |
---|
2902 | <Hsp_hseq>GAGATGACGGTTGCAGAGTCATGCGTTTGA</Hsp_hseq> |
---|
2903 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2904 | </Hsp> |
---|
2905 | </Hit_hsps> |
---|
2906 | </Hit> |
---|
2907 | </Iteration_hits> |
---|
2908 | <Iteration_stat> |
---|
2909 | <Statistics> |
---|
2910 | <Statistics_db-num>1</Statistics_db-num> |
---|
2911 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2912 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2913 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2914 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2915 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2916 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2917 | </Statistics> |
---|
2918 | </Iteration_stat> |
---|
2919 | </Iteration> |
---|
2920 | <Iteration> |
---|
2921 | <Iteration_iter-num>66</Iteration_iter-num> |
---|
2922 | <Iteration_query-ID>lcl|66_0</Iteration_query-ID> |
---|
2923 | <Iteration_query-def>65_0.533333</Iteration_query-def> |
---|
2924 | <Iteration_query-len>30</Iteration_query-len> |
---|
2925 | <Iteration_hits> |
---|
2926 | <Hit> |
---|
2927 | <Hit_num>1</Hit_num> |
---|
2928 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2929 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2930 | <Hit_accession>0</Hit_accession> |
---|
2931 | <Hit_len>5528445</Hit_len> |
---|
2932 | <Hit_hsps> |
---|
2933 | <Hsp> |
---|
2934 | <Hsp_num>1</Hsp_num> |
---|
2935 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2936 | <Hsp_score>30</Hsp_score> |
---|
2937 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2938 | <Hsp_query-from>1</Hsp_query-from> |
---|
2939 | <Hsp_query-to>30</Hsp_query-to> |
---|
2940 | <Hsp_hit-from>3963858</Hsp_hit-from> |
---|
2941 | <Hsp_hit-to>3963887</Hsp_hit-to> |
---|
2942 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2943 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2944 | <Hsp_identity>30</Hsp_identity> |
---|
2945 | <Hsp_positive>30</Hsp_positive> |
---|
2946 | <Hsp_align-len>30</Hsp_align-len> |
---|
2947 | <Hsp_qseq>TCTGGATCACGCGCAAACACTGGCTATCGT</Hsp_qseq> |
---|
2948 | <Hsp_hseq>TCTGGATCACGCGCAAACACTGGCTATCGT</Hsp_hseq> |
---|
2949 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2950 | </Hsp> |
---|
2951 | </Hit_hsps> |
---|
2952 | </Hit> |
---|
2953 | </Iteration_hits> |
---|
2954 | <Iteration_stat> |
---|
2955 | <Statistics> |
---|
2956 | <Statistics_db-num>1</Statistics_db-num> |
---|
2957 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
2958 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
2959 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
2960 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
2961 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
2962 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
2963 | </Statistics> |
---|
2964 | </Iteration_stat> |
---|
2965 | </Iteration> |
---|
2966 | <Iteration> |
---|
2967 | <Iteration_iter-num>67</Iteration_iter-num> |
---|
2968 | <Iteration_query-ID>lcl|67_0</Iteration_query-ID> |
---|
2969 | <Iteration_query-def>66_0.466667</Iteration_query-def> |
---|
2970 | <Iteration_query-len>30</Iteration_query-len> |
---|
2971 | <Iteration_hits> |
---|
2972 | <Hit> |
---|
2973 | <Hit_num>1</Hit_num> |
---|
2974 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
2975 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
2976 | <Hit_accession>0</Hit_accession> |
---|
2977 | <Hit_len>5528445</Hit_len> |
---|
2978 | <Hit_hsps> |
---|
2979 | <Hsp> |
---|
2980 | <Hsp_num>1</Hsp_num> |
---|
2981 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
2982 | <Hsp_score>30</Hsp_score> |
---|
2983 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
2984 | <Hsp_query-from>1</Hsp_query-from> |
---|
2985 | <Hsp_query-to>30</Hsp_query-to> |
---|
2986 | <Hsp_hit-from>4142497</Hsp_hit-from> |
---|
2987 | <Hsp_hit-to>4142526</Hsp_hit-to> |
---|
2988 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
2989 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
2990 | <Hsp_identity>30</Hsp_identity> |
---|
2991 | <Hsp_positive>30</Hsp_positive> |
---|
2992 | <Hsp_align-len>30</Hsp_align-len> |
---|
2993 | <Hsp_qseq>TCTGCTTTAGCAAACAGAGTGTGGTCACGA</Hsp_qseq> |
---|
2994 | <Hsp_hseq>TCTGCTTTAGCAAACAGAGTGTGGTCACGA</Hsp_hseq> |
---|
2995 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
2996 | </Hsp> |
---|
2997 | </Hit_hsps> |
---|
2998 | </Hit> |
---|
2999 | </Iteration_hits> |
---|
3000 | <Iteration_stat> |
---|
3001 | <Statistics> |
---|
3002 | <Statistics_db-num>1</Statistics_db-num> |
---|
3003 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3004 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3005 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3006 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3007 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3008 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3009 | </Statistics> |
---|
3010 | </Iteration_stat> |
---|
3011 | </Iteration> |
---|
3012 | <Iteration> |
---|
3013 | <Iteration_iter-num>68</Iteration_iter-num> |
---|
3014 | <Iteration_query-ID>lcl|68_0</Iteration_query-ID> |
---|
3015 | <Iteration_query-def>67_0.400000</Iteration_query-def> |
---|
3016 | <Iteration_query-len>30</Iteration_query-len> |
---|
3017 | <Iteration_hits> |
---|
3018 | <Hit> |
---|
3019 | <Hit_num>1</Hit_num> |
---|
3020 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3021 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3022 | <Hit_accession>0</Hit_accession> |
---|
3023 | <Hit_len>5528445</Hit_len> |
---|
3024 | <Hit_hsps> |
---|
3025 | <Hsp> |
---|
3026 | <Hsp_num>1</Hsp_num> |
---|
3027 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3028 | <Hsp_score>30</Hsp_score> |
---|
3029 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3030 | <Hsp_query-from>1</Hsp_query-from> |
---|
3031 | <Hsp_query-to>30</Hsp_query-to> |
---|
3032 | <Hsp_hit-from>3532236</Hsp_hit-from> |
---|
3033 | <Hsp_hit-to>3532265</Hsp_hit-to> |
---|
3034 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3035 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3036 | <Hsp_identity>30</Hsp_identity> |
---|
3037 | <Hsp_positive>30</Hsp_positive> |
---|
3038 | <Hsp_align-len>30</Hsp_align-len> |
---|
3039 | <Hsp_qseq>GCCTTTTGTCTGATCATCCACAATAATGAC</Hsp_qseq> |
---|
3040 | <Hsp_hseq>GCCTTTTGTCTGATCATCCACAATAATGAC</Hsp_hseq> |
---|
3041 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3042 | </Hsp> |
---|
3043 | </Hit_hsps> |
---|
3044 | </Hit> |
---|
3045 | </Iteration_hits> |
---|
3046 | <Iteration_stat> |
---|
3047 | <Statistics> |
---|
3048 | <Statistics_db-num>1</Statistics_db-num> |
---|
3049 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3050 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3051 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3052 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3053 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3054 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3055 | </Statistics> |
---|
3056 | </Iteration_stat> |
---|
3057 | </Iteration> |
---|
3058 | <Iteration> |
---|
3059 | <Iteration_iter-num>69</Iteration_iter-num> |
---|
3060 | <Iteration_query-ID>lcl|69_0</Iteration_query-ID> |
---|
3061 | <Iteration_query-def>68_0.566667</Iteration_query-def> |
---|
3062 | <Iteration_query-len>30</Iteration_query-len> |
---|
3063 | <Iteration_hits> |
---|
3064 | <Hit> |
---|
3065 | <Hit_num>1</Hit_num> |
---|
3066 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3067 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3068 | <Hit_accession>0</Hit_accession> |
---|
3069 | <Hit_len>5528445</Hit_len> |
---|
3070 | <Hit_hsps> |
---|
3071 | <Hsp> |
---|
3072 | <Hsp_num>1</Hsp_num> |
---|
3073 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3074 | <Hsp_score>30</Hsp_score> |
---|
3075 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3076 | <Hsp_query-from>1</Hsp_query-from> |
---|
3077 | <Hsp_query-to>30</Hsp_query-to> |
---|
3078 | <Hsp_hit-from>779994</Hsp_hit-from> |
---|
3079 | <Hsp_hit-to>780023</Hsp_hit-to> |
---|
3080 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3081 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3082 | <Hsp_identity>30</Hsp_identity> |
---|
3083 | <Hsp_positive>30</Hsp_positive> |
---|
3084 | <Hsp_align-len>30</Hsp_align-len> |
---|
3085 | <Hsp_qseq>GAAGGATAGTTGGTCAGCAACACCAGCGGC</Hsp_qseq> |
---|
3086 | <Hsp_hseq>GAAGGATAGTTGGTCAGCAACACCAGCGGC</Hsp_hseq> |
---|
3087 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3088 | </Hsp> |
---|
3089 | </Hit_hsps> |
---|
3090 | </Hit> |
---|
3091 | </Iteration_hits> |
---|
3092 | <Iteration_stat> |
---|
3093 | <Statistics> |
---|
3094 | <Statistics_db-num>1</Statistics_db-num> |
---|
3095 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3096 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3097 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3098 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3099 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3100 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3101 | </Statistics> |
---|
3102 | </Iteration_stat> |
---|
3103 | </Iteration> |
---|
3104 | <Iteration> |
---|
3105 | <Iteration_iter-num>71</Iteration_iter-num> |
---|
3106 | <Iteration_query-ID>lcl|71_0</Iteration_query-ID> |
---|
3107 | <Iteration_query-def>70_0.466667</Iteration_query-def> |
---|
3108 | <Iteration_query-len>30</Iteration_query-len> |
---|
3109 | <Iteration_hits> |
---|
3110 | <Hit> |
---|
3111 | <Hit_num>1</Hit_num> |
---|
3112 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3113 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3114 | <Hit_accession>0</Hit_accession> |
---|
3115 | <Hit_len>5528445</Hit_len> |
---|
3116 | <Hit_hsps> |
---|
3117 | <Hsp> |
---|
3118 | <Hsp_num>1</Hsp_num> |
---|
3119 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3120 | <Hsp_score>30</Hsp_score> |
---|
3121 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3122 | <Hsp_query-from>1</Hsp_query-from> |
---|
3123 | <Hsp_query-to>30</Hsp_query-to> |
---|
3124 | <Hsp_hit-from>1317239</Hsp_hit-from> |
---|
3125 | <Hsp_hit-to>1317268</Hsp_hit-to> |
---|
3126 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3127 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3128 | <Hsp_identity>30</Hsp_identity> |
---|
3129 | <Hsp_positive>30</Hsp_positive> |
---|
3130 | <Hsp_align-len>30</Hsp_align-len> |
---|
3131 | <Hsp_qseq>TGGTGTTCAGCATCTCAACGGTAATTCGCT</Hsp_qseq> |
---|
3132 | <Hsp_hseq>TGGTGTTCAGCATCTCAACGGTAATTCGCT</Hsp_hseq> |
---|
3133 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3134 | </Hsp> |
---|
3135 | </Hit_hsps> |
---|
3136 | </Hit> |
---|
3137 | </Iteration_hits> |
---|
3138 | <Iteration_stat> |
---|
3139 | <Statistics> |
---|
3140 | <Statistics_db-num>1</Statistics_db-num> |
---|
3141 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3142 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3143 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3144 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3145 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3146 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3147 | </Statistics> |
---|
3148 | </Iteration_stat> |
---|
3149 | </Iteration> |
---|
3150 | <Iteration> |
---|
3151 | <Iteration_iter-num>72</Iteration_iter-num> |
---|
3152 | <Iteration_query-ID>lcl|72_0</Iteration_query-ID> |
---|
3153 | <Iteration_query-def>71_0.533333</Iteration_query-def> |
---|
3154 | <Iteration_query-len>30</Iteration_query-len> |
---|
3155 | <Iteration_hits> |
---|
3156 | <Hit> |
---|
3157 | <Hit_num>1</Hit_num> |
---|
3158 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3159 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3160 | <Hit_accession>0</Hit_accession> |
---|
3161 | <Hit_len>5528445</Hit_len> |
---|
3162 | <Hit_hsps> |
---|
3163 | <Hsp> |
---|
3164 | <Hsp_num>1</Hsp_num> |
---|
3165 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3166 | <Hsp_score>30</Hsp_score> |
---|
3167 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3168 | <Hsp_query-from>1</Hsp_query-from> |
---|
3169 | <Hsp_query-to>30</Hsp_query-to> |
---|
3170 | <Hsp_hit-from>5080463</Hsp_hit-from> |
---|
3171 | <Hsp_hit-to>5080492</Hsp_hit-to> |
---|
3172 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3173 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3174 | <Hsp_identity>30</Hsp_identity> |
---|
3175 | <Hsp_positive>30</Hsp_positive> |
---|
3176 | <Hsp_align-len>30</Hsp_align-len> |
---|
3177 | <Hsp_qseq>CAGGATGCAAACTGCCGGGAGATCCAGTTA</Hsp_qseq> |
---|
3178 | <Hsp_hseq>CAGGATGCAAACTGCCGGGAGATCCAGTTA</Hsp_hseq> |
---|
3179 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3180 | </Hsp> |
---|
3181 | </Hit_hsps> |
---|
3182 | </Hit> |
---|
3183 | </Iteration_hits> |
---|
3184 | <Iteration_stat> |
---|
3185 | <Statistics> |
---|
3186 | <Statistics_db-num>1</Statistics_db-num> |
---|
3187 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3188 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3189 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3190 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3191 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3192 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3193 | </Statistics> |
---|
3194 | </Iteration_stat> |
---|
3195 | </Iteration> |
---|
3196 | <Iteration> |
---|
3197 | <Iteration_iter-num>73</Iteration_iter-num> |
---|
3198 | <Iteration_query-ID>lcl|73_0</Iteration_query-ID> |
---|
3199 | <Iteration_query-def>72_0.533333</Iteration_query-def> |
---|
3200 | <Iteration_query-len>30</Iteration_query-len> |
---|
3201 | <Iteration_hits> |
---|
3202 | <Hit> |
---|
3203 | <Hit_num>1</Hit_num> |
---|
3204 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3205 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3206 | <Hit_accession>0</Hit_accession> |
---|
3207 | <Hit_len>5528445</Hit_len> |
---|
3208 | <Hit_hsps> |
---|
3209 | <Hsp> |
---|
3210 | <Hsp_num>1</Hsp_num> |
---|
3211 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3212 | <Hsp_score>30</Hsp_score> |
---|
3213 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3214 | <Hsp_query-from>1</Hsp_query-from> |
---|
3215 | <Hsp_query-to>30</Hsp_query-to> |
---|
3216 | <Hsp_hit-from>3605409</Hsp_hit-from> |
---|
3217 | <Hsp_hit-to>3605438</Hsp_hit-to> |
---|
3218 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3219 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3220 | <Hsp_identity>30</Hsp_identity> |
---|
3221 | <Hsp_positive>30</Hsp_positive> |
---|
3222 | <Hsp_align-len>30</Hsp_align-len> |
---|
3223 | <Hsp_qseq>AACTGGAAGGGCTTGGGATGACACAACAGC</Hsp_qseq> |
---|
3224 | <Hsp_hseq>AACTGGAAGGGCTTGGGATGACACAACAGC</Hsp_hseq> |
---|
3225 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3226 | </Hsp> |
---|
3227 | </Hit_hsps> |
---|
3228 | </Hit> |
---|
3229 | </Iteration_hits> |
---|
3230 | <Iteration_stat> |
---|
3231 | <Statistics> |
---|
3232 | <Statistics_db-num>1</Statistics_db-num> |
---|
3233 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3234 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3235 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3236 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3237 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3238 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3239 | </Statistics> |
---|
3240 | </Iteration_stat> |
---|
3241 | </Iteration> |
---|
3242 | <Iteration> |
---|
3243 | <Iteration_iter-num>74</Iteration_iter-num> |
---|
3244 | <Iteration_query-ID>lcl|74_0</Iteration_query-ID> |
---|
3245 | <Iteration_query-def>73_0.500000</Iteration_query-def> |
---|
3246 | <Iteration_query-len>30</Iteration_query-len> |
---|
3247 | <Iteration_hits> |
---|
3248 | <Hit> |
---|
3249 | <Hit_num>1</Hit_num> |
---|
3250 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3251 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3252 | <Hit_accession>0</Hit_accession> |
---|
3253 | <Hit_len>5528445</Hit_len> |
---|
3254 | <Hit_hsps> |
---|
3255 | <Hsp> |
---|
3256 | <Hsp_num>1</Hsp_num> |
---|
3257 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3258 | <Hsp_score>30</Hsp_score> |
---|
3259 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3260 | <Hsp_query-from>1</Hsp_query-from> |
---|
3261 | <Hsp_query-to>30</Hsp_query-to> |
---|
3262 | <Hsp_hit-from>3280815</Hsp_hit-from> |
---|
3263 | <Hsp_hit-to>3280844</Hsp_hit-to> |
---|
3264 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3265 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3266 | <Hsp_identity>30</Hsp_identity> |
---|
3267 | <Hsp_positive>30</Hsp_positive> |
---|
3268 | <Hsp_align-len>30</Hsp_align-len> |
---|
3269 | <Hsp_qseq>TTTAAGCGCCAACCAGGCTTCTTTGGTTGC</Hsp_qseq> |
---|
3270 | <Hsp_hseq>TTTAAGCGCCAACCAGGCTTCTTTGGTTGC</Hsp_hseq> |
---|
3271 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3272 | </Hsp> |
---|
3273 | </Hit_hsps> |
---|
3274 | </Hit> |
---|
3275 | </Iteration_hits> |
---|
3276 | <Iteration_stat> |
---|
3277 | <Statistics> |
---|
3278 | <Statistics_db-num>1</Statistics_db-num> |
---|
3279 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3280 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3281 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3282 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3283 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3284 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3285 | </Statistics> |
---|
3286 | </Iteration_stat> |
---|
3287 | </Iteration> |
---|
3288 | <Iteration> |
---|
3289 | <Iteration_iter-num>76</Iteration_iter-num> |
---|
3290 | <Iteration_query-ID>lcl|76_0</Iteration_query-ID> |
---|
3291 | <Iteration_query-def>75_0.533333</Iteration_query-def> |
---|
3292 | <Iteration_query-len>30</Iteration_query-len> |
---|
3293 | <Iteration_hits> |
---|
3294 | <Hit> |
---|
3295 | <Hit_num>1</Hit_num> |
---|
3296 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3297 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3298 | <Hit_accession>0</Hit_accession> |
---|
3299 | <Hit_len>5528445</Hit_len> |
---|
3300 | <Hit_hsps> |
---|
3301 | <Hsp> |
---|
3302 | <Hsp_num>1</Hsp_num> |
---|
3303 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3304 | <Hsp_score>30</Hsp_score> |
---|
3305 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3306 | <Hsp_query-from>1</Hsp_query-from> |
---|
3307 | <Hsp_query-to>30</Hsp_query-to> |
---|
3308 | <Hsp_hit-from>2230266</Hsp_hit-from> |
---|
3309 | <Hsp_hit-to>2230295</Hsp_hit-to> |
---|
3310 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3311 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3312 | <Hsp_identity>30</Hsp_identity> |
---|
3313 | <Hsp_positive>30</Hsp_positive> |
---|
3314 | <Hsp_align-len>30</Hsp_align-len> |
---|
3315 | <Hsp_qseq>ATAACCCTCTGCAACCGCCGCTTCAGCAAA</Hsp_qseq> |
---|
3316 | <Hsp_hseq>ATAACCCTCTGCAACCGCCGCTTCAGCAAA</Hsp_hseq> |
---|
3317 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3318 | </Hsp> |
---|
3319 | </Hit_hsps> |
---|
3320 | </Hit> |
---|
3321 | </Iteration_hits> |
---|
3322 | <Iteration_stat> |
---|
3323 | <Statistics> |
---|
3324 | <Statistics_db-num>1</Statistics_db-num> |
---|
3325 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3326 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3327 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3328 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3329 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3330 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3331 | </Statistics> |
---|
3332 | </Iteration_stat> |
---|
3333 | </Iteration> |
---|
3334 | <Iteration> |
---|
3335 | <Iteration_iter-num>77</Iteration_iter-num> |
---|
3336 | <Iteration_query-ID>lcl|77_0</Iteration_query-ID> |
---|
3337 | <Iteration_query-def>76_0.600000</Iteration_query-def> |
---|
3338 | <Iteration_query-len>30</Iteration_query-len> |
---|
3339 | <Iteration_hits> |
---|
3340 | <Hit> |
---|
3341 | <Hit_num>1</Hit_num> |
---|
3342 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3343 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3344 | <Hit_accession>0</Hit_accession> |
---|
3345 | <Hit_len>5528445</Hit_len> |
---|
3346 | <Hit_hsps> |
---|
3347 | <Hsp> |
---|
3348 | <Hsp_num>1</Hsp_num> |
---|
3349 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3350 | <Hsp_score>30</Hsp_score> |
---|
3351 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3352 | <Hsp_query-from>1</Hsp_query-from> |
---|
3353 | <Hsp_query-to>30</Hsp_query-to> |
---|
3354 | <Hsp_hit-from>462631</Hsp_hit-from> |
---|
3355 | <Hsp_hit-to>462660</Hsp_hit-to> |
---|
3356 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3357 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3358 | <Hsp_identity>30</Hsp_identity> |
---|
3359 | <Hsp_positive>30</Hsp_positive> |
---|
3360 | <Hsp_align-len>30</Hsp_align-len> |
---|
3361 | <Hsp_qseq>TGAAGCCGTACAACGGGCGCTGGAATTCGC</Hsp_qseq> |
---|
3362 | <Hsp_hseq>TGAAGCCGTACAACGGGCGCTGGAATTCGC</Hsp_hseq> |
---|
3363 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3364 | </Hsp> |
---|
3365 | </Hit_hsps> |
---|
3366 | </Hit> |
---|
3367 | </Iteration_hits> |
---|
3368 | <Iteration_stat> |
---|
3369 | <Statistics> |
---|
3370 | <Statistics_db-num>1</Statistics_db-num> |
---|
3371 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3372 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3373 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3374 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3375 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3376 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3377 | </Statistics> |
---|
3378 | </Iteration_stat> |
---|
3379 | </Iteration> |
---|
3380 | <Iteration> |
---|
3381 | <Iteration_iter-num>78</Iteration_iter-num> |
---|
3382 | <Iteration_query-ID>lcl|78_0</Iteration_query-ID> |
---|
3383 | <Iteration_query-def>77_0.700000</Iteration_query-def> |
---|
3384 | <Iteration_query-len>30</Iteration_query-len> |
---|
3385 | <Iteration_hits> |
---|
3386 | <Hit> |
---|
3387 | <Hit_num>1</Hit_num> |
---|
3388 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3389 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3390 | <Hit_accession>0</Hit_accession> |
---|
3391 | <Hit_len>5528445</Hit_len> |
---|
3392 | <Hit_hsps> |
---|
3393 | <Hsp> |
---|
3394 | <Hsp_num>1</Hsp_num> |
---|
3395 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3396 | <Hsp_score>30</Hsp_score> |
---|
3397 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3398 | <Hsp_query-from>1</Hsp_query-from> |
---|
3399 | <Hsp_query-to>30</Hsp_query-to> |
---|
3400 | <Hsp_hit-from>2939076</Hsp_hit-from> |
---|
3401 | <Hsp_hit-to>2939105</Hsp_hit-to> |
---|
3402 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3403 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3404 | <Hsp_identity>30</Hsp_identity> |
---|
3405 | <Hsp_positive>30</Hsp_positive> |
---|
3406 | <Hsp_align-len>30</Hsp_align-len> |
---|
3407 | <Hsp_qseq>GAGCTGCAACGCGGTCAGCCAGCTGGCGGT</Hsp_qseq> |
---|
3408 | <Hsp_hseq>GAGCTGCAACGCGGTCAGCCAGCTGGCGGT</Hsp_hseq> |
---|
3409 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3410 | </Hsp> |
---|
3411 | </Hit_hsps> |
---|
3412 | </Hit> |
---|
3413 | </Iteration_hits> |
---|
3414 | <Iteration_stat> |
---|
3415 | <Statistics> |
---|
3416 | <Statistics_db-num>1</Statistics_db-num> |
---|
3417 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3418 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3419 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3420 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3421 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3422 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3423 | </Statistics> |
---|
3424 | </Iteration_stat> |
---|
3425 | </Iteration> |
---|
3426 | <Iteration> |
---|
3427 | <Iteration_iter-num>79</Iteration_iter-num> |
---|
3428 | <Iteration_query-ID>lcl|79_0</Iteration_query-ID> |
---|
3429 | <Iteration_query-def>78_0.566667</Iteration_query-def> |
---|
3430 | <Iteration_query-len>30</Iteration_query-len> |
---|
3431 | <Iteration_hits> |
---|
3432 | <Hit> |
---|
3433 | <Hit_num>1</Hit_num> |
---|
3434 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3435 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3436 | <Hit_accession>0</Hit_accession> |
---|
3437 | <Hit_len>5528445</Hit_len> |
---|
3438 | <Hit_hsps> |
---|
3439 | <Hsp> |
---|
3440 | <Hsp_num>1</Hsp_num> |
---|
3441 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3442 | <Hsp_score>30</Hsp_score> |
---|
3443 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3444 | <Hsp_query-from>1</Hsp_query-from> |
---|
3445 | <Hsp_query-to>30</Hsp_query-to> |
---|
3446 | <Hsp_hit-from>5422053</Hsp_hit-from> |
---|
3447 | <Hsp_hit-to>5422082</Hsp_hit-to> |
---|
3448 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3449 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3450 | <Hsp_identity>30</Hsp_identity> |
---|
3451 | <Hsp_positive>30</Hsp_positive> |
---|
3452 | <Hsp_align-len>30</Hsp_align-len> |
---|
3453 | <Hsp_qseq>CGGAGTATCCGTTCCCCAACGACAAGCATC</Hsp_qseq> |
---|
3454 | <Hsp_hseq>CGGAGTATCCGTTCCCCAACGACAAGCATC</Hsp_hseq> |
---|
3455 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3456 | </Hsp> |
---|
3457 | </Hit_hsps> |
---|
3458 | </Hit> |
---|
3459 | </Iteration_hits> |
---|
3460 | <Iteration_stat> |
---|
3461 | <Statistics> |
---|
3462 | <Statistics_db-num>1</Statistics_db-num> |
---|
3463 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3464 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3465 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3466 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3467 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3468 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3469 | </Statistics> |
---|
3470 | </Iteration_stat> |
---|
3471 | </Iteration> |
---|
3472 | <Iteration> |
---|
3473 | <Iteration_iter-num>80</Iteration_iter-num> |
---|
3474 | <Iteration_query-ID>lcl|80_0</Iteration_query-ID> |
---|
3475 | <Iteration_query-def>79_0.500000</Iteration_query-def> |
---|
3476 | <Iteration_query-len>30</Iteration_query-len> |
---|
3477 | <Iteration_hits> |
---|
3478 | <Hit> |
---|
3479 | <Hit_num>1</Hit_num> |
---|
3480 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3481 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3482 | <Hit_accession>0</Hit_accession> |
---|
3483 | <Hit_len>5528445</Hit_len> |
---|
3484 | <Hit_hsps> |
---|
3485 | <Hsp> |
---|
3486 | <Hsp_num>1</Hsp_num> |
---|
3487 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3488 | <Hsp_score>30</Hsp_score> |
---|
3489 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3490 | <Hsp_query-from>1</Hsp_query-from> |
---|
3491 | <Hsp_query-to>30</Hsp_query-to> |
---|
3492 | <Hsp_hit-from>4387420</Hsp_hit-from> |
---|
3493 | <Hsp_hit-to>4387449</Hsp_hit-to> |
---|
3494 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3495 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3496 | <Hsp_identity>30</Hsp_identity> |
---|
3497 | <Hsp_positive>30</Hsp_positive> |
---|
3498 | <Hsp_align-len>30</Hsp_align-len> |
---|
3499 | <Hsp_qseq>AATACCGGGAAGAGACAACGGGGTCTCTTT</Hsp_qseq> |
---|
3500 | <Hsp_hseq>AATACCGGGAAGAGACAACGGGGTCTCTTT</Hsp_hseq> |
---|
3501 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3502 | </Hsp> |
---|
3503 | </Hit_hsps> |
---|
3504 | </Hit> |
---|
3505 | </Iteration_hits> |
---|
3506 | <Iteration_stat> |
---|
3507 | <Statistics> |
---|
3508 | <Statistics_db-num>1</Statistics_db-num> |
---|
3509 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3510 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3511 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3512 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3513 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3514 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3515 | </Statistics> |
---|
3516 | </Iteration_stat> |
---|
3517 | </Iteration> |
---|
3518 | <Iteration> |
---|
3519 | <Iteration_iter-num>82</Iteration_iter-num> |
---|
3520 | <Iteration_query-ID>lcl|82_0</Iteration_query-ID> |
---|
3521 | <Iteration_query-def>81_0.433333</Iteration_query-def> |
---|
3522 | <Iteration_query-len>30</Iteration_query-len> |
---|
3523 | <Iteration_hits> |
---|
3524 | <Hit> |
---|
3525 | <Hit_num>1</Hit_num> |
---|
3526 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3527 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3528 | <Hit_accession>0</Hit_accession> |
---|
3529 | <Hit_len>5528445</Hit_len> |
---|
3530 | <Hit_hsps> |
---|
3531 | <Hsp> |
---|
3532 | <Hsp_num>1</Hsp_num> |
---|
3533 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3534 | <Hsp_score>30</Hsp_score> |
---|
3535 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3536 | <Hsp_query-from>1</Hsp_query-from> |
---|
3537 | <Hsp_query-to>30</Hsp_query-to> |
---|
3538 | <Hsp_hit-from>1037150</Hsp_hit-from> |
---|
3539 | <Hsp_hit-to>1037179</Hsp_hit-to> |
---|
3540 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3541 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3542 | <Hsp_identity>30</Hsp_identity> |
---|
3543 | <Hsp_positive>30</Hsp_positive> |
---|
3544 | <Hsp_align-len>30</Hsp_align-len> |
---|
3545 | <Hsp_qseq>ATTAATGTTGCCGGCACAACATAATAGGGC</Hsp_qseq> |
---|
3546 | <Hsp_hseq>ATTAATGTTGCCGGCACAACATAATAGGGC</Hsp_hseq> |
---|
3547 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3548 | </Hsp> |
---|
3549 | </Hit_hsps> |
---|
3550 | </Hit> |
---|
3551 | </Iteration_hits> |
---|
3552 | <Iteration_stat> |
---|
3553 | <Statistics> |
---|
3554 | <Statistics_db-num>1</Statistics_db-num> |
---|
3555 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3556 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3557 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3558 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3559 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3560 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3561 | </Statistics> |
---|
3562 | </Iteration_stat> |
---|
3563 | </Iteration> |
---|
3564 | <Iteration> |
---|
3565 | <Iteration_iter-num>83</Iteration_iter-num> |
---|
3566 | <Iteration_query-ID>lcl|83_0</Iteration_query-ID> |
---|
3567 | <Iteration_query-def>82_0.500000</Iteration_query-def> |
---|
3568 | <Iteration_query-len>30</Iteration_query-len> |
---|
3569 | <Iteration_hits> |
---|
3570 | <Hit> |
---|
3571 | <Hit_num>1</Hit_num> |
---|
3572 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3573 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3574 | <Hit_accession>0</Hit_accession> |
---|
3575 | <Hit_len>5528445</Hit_len> |
---|
3576 | <Hit_hsps> |
---|
3577 | <Hsp> |
---|
3578 | <Hsp_num>1</Hsp_num> |
---|
3579 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3580 | <Hsp_score>30</Hsp_score> |
---|
3581 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3582 | <Hsp_query-from>1</Hsp_query-from> |
---|
3583 | <Hsp_query-to>30</Hsp_query-to> |
---|
3584 | <Hsp_hit-from>1182188</Hsp_hit-from> |
---|
3585 | <Hsp_hit-to>1182217</Hsp_hit-to> |
---|
3586 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3587 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3588 | <Hsp_identity>30</Hsp_identity> |
---|
3589 | <Hsp_positive>30</Hsp_positive> |
---|
3590 | <Hsp_align-len>30</Hsp_align-len> |
---|
3591 | <Hsp_qseq>ACTGGGTTGCTCTGAACAAGAAAGGCGCTA</Hsp_qseq> |
---|
3592 | <Hsp_hseq>ACTGGGTTGCTCTGAACAAGAAAGGCGCTA</Hsp_hseq> |
---|
3593 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3594 | </Hsp> |
---|
3595 | </Hit_hsps> |
---|
3596 | </Hit> |
---|
3597 | </Iteration_hits> |
---|
3598 | <Iteration_stat> |
---|
3599 | <Statistics> |
---|
3600 | <Statistics_db-num>1</Statistics_db-num> |
---|
3601 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3602 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3603 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3604 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3605 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3606 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3607 | </Statistics> |
---|
3608 | </Iteration_stat> |
---|
3609 | </Iteration> |
---|
3610 | <Iteration> |
---|
3611 | <Iteration_iter-num>84</Iteration_iter-num> |
---|
3612 | <Iteration_query-ID>lcl|84_0</Iteration_query-ID> |
---|
3613 | <Iteration_query-def>83_0.533333</Iteration_query-def> |
---|
3614 | <Iteration_query-len>30</Iteration_query-len> |
---|
3615 | <Iteration_hits> |
---|
3616 | <Hit> |
---|
3617 | <Hit_num>1</Hit_num> |
---|
3618 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3619 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3620 | <Hit_accession>0</Hit_accession> |
---|
3621 | <Hit_len>5528445</Hit_len> |
---|
3622 | <Hit_hsps> |
---|
3623 | <Hsp> |
---|
3624 | <Hsp_num>1</Hsp_num> |
---|
3625 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3626 | <Hsp_score>30</Hsp_score> |
---|
3627 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3628 | <Hsp_query-from>1</Hsp_query-from> |
---|
3629 | <Hsp_query-to>30</Hsp_query-to> |
---|
3630 | <Hsp_hit-from>5430210</Hsp_hit-from> |
---|
3631 | <Hsp_hit-to>5430239</Hsp_hit-to> |
---|
3632 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3633 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3634 | <Hsp_identity>30</Hsp_identity> |
---|
3635 | <Hsp_positive>30</Hsp_positive> |
---|
3636 | <Hsp_align-len>30</Hsp_align-len> |
---|
3637 | <Hsp_qseq>CGCCAGGGACGTATCGCGTCGATATCTATT</Hsp_qseq> |
---|
3638 | <Hsp_hseq>CGCCAGGGACGTATCGCGTCGATATCTATT</Hsp_hseq> |
---|
3639 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3640 | </Hsp> |
---|
3641 | </Hit_hsps> |
---|
3642 | </Hit> |
---|
3643 | </Iteration_hits> |
---|
3644 | <Iteration_stat> |
---|
3645 | <Statistics> |
---|
3646 | <Statistics_db-num>1</Statistics_db-num> |
---|
3647 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3648 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3649 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3650 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3651 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3652 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3653 | </Statistics> |
---|
3654 | </Iteration_stat> |
---|
3655 | </Iteration> |
---|
3656 | <Iteration> |
---|
3657 | <Iteration_iter-num>85</Iteration_iter-num> |
---|
3658 | <Iteration_query-ID>lcl|85_0</Iteration_query-ID> |
---|
3659 | <Iteration_query-def>84_0.533333</Iteration_query-def> |
---|
3660 | <Iteration_query-len>30</Iteration_query-len> |
---|
3661 | <Iteration_hits> |
---|
3662 | <Hit> |
---|
3663 | <Hit_num>1</Hit_num> |
---|
3664 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3665 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3666 | <Hit_accession>0</Hit_accession> |
---|
3667 | <Hit_len>5528445</Hit_len> |
---|
3668 | <Hit_hsps> |
---|
3669 | <Hsp> |
---|
3670 | <Hsp_num>1</Hsp_num> |
---|
3671 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3672 | <Hsp_score>30</Hsp_score> |
---|
3673 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3674 | <Hsp_query-from>1</Hsp_query-from> |
---|
3675 | <Hsp_query-to>30</Hsp_query-to> |
---|
3676 | <Hsp_hit-from>310995</Hsp_hit-from> |
---|
3677 | <Hsp_hit-to>311024</Hsp_hit-to> |
---|
3678 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3679 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3680 | <Hsp_identity>30</Hsp_identity> |
---|
3681 | <Hsp_positive>30</Hsp_positive> |
---|
3682 | <Hsp_align-len>30</Hsp_align-len> |
---|
3683 | <Hsp_qseq>TGCTCGTTCCCGTCGTGATGAAGCTCGAAA</Hsp_qseq> |
---|
3684 | <Hsp_hseq>TGCTCGTTCCCGTCGTGATGAAGCTCGAAA</Hsp_hseq> |
---|
3685 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3686 | </Hsp> |
---|
3687 | </Hit_hsps> |
---|
3688 | </Hit> |
---|
3689 | </Iteration_hits> |
---|
3690 | <Iteration_stat> |
---|
3691 | <Statistics> |
---|
3692 | <Statistics_db-num>1</Statistics_db-num> |
---|
3693 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3694 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3695 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3696 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3697 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3698 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3699 | </Statistics> |
---|
3700 | </Iteration_stat> |
---|
3701 | </Iteration> |
---|
3702 | <Iteration> |
---|
3703 | <Iteration_iter-num>86</Iteration_iter-num> |
---|
3704 | <Iteration_query-ID>lcl|86_0</Iteration_query-ID> |
---|
3705 | <Iteration_query-def>85_0.500000</Iteration_query-def> |
---|
3706 | <Iteration_query-len>30</Iteration_query-len> |
---|
3707 | <Iteration_hits> |
---|
3708 | <Hit> |
---|
3709 | <Hit_num>1</Hit_num> |
---|
3710 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3711 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3712 | <Hit_accession>0</Hit_accession> |
---|
3713 | <Hit_len>5528445</Hit_len> |
---|
3714 | <Hit_hsps> |
---|
3715 | <Hsp> |
---|
3716 | <Hsp_num>1</Hsp_num> |
---|
3717 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3718 | <Hsp_score>30</Hsp_score> |
---|
3719 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3720 | <Hsp_query-from>1</Hsp_query-from> |
---|
3721 | <Hsp_query-to>30</Hsp_query-to> |
---|
3722 | <Hsp_hit-from>4174173</Hsp_hit-from> |
---|
3723 | <Hsp_hit-to>4174202</Hsp_hit-to> |
---|
3724 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3725 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3726 | <Hsp_identity>30</Hsp_identity> |
---|
3727 | <Hsp_positive>30</Hsp_positive> |
---|
3728 | <Hsp_align-len>30</Hsp_align-len> |
---|
3729 | <Hsp_qseq>AGGAAAGCAAACAACACGACCACCATCAGC</Hsp_qseq> |
---|
3730 | <Hsp_hseq>AGGAAAGCAAACAACACGACCACCATCAGC</Hsp_hseq> |
---|
3731 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3732 | </Hsp> |
---|
3733 | </Hit_hsps> |
---|
3734 | </Hit> |
---|
3735 | </Iteration_hits> |
---|
3736 | <Iteration_stat> |
---|
3737 | <Statistics> |
---|
3738 | <Statistics_db-num>1</Statistics_db-num> |
---|
3739 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3740 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3741 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3742 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3743 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3744 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3745 | </Statistics> |
---|
3746 | </Iteration_stat> |
---|
3747 | </Iteration> |
---|
3748 | <Iteration> |
---|
3749 | <Iteration_iter-num>87</Iteration_iter-num> |
---|
3750 | <Iteration_query-ID>lcl|87_0</Iteration_query-ID> |
---|
3751 | <Iteration_query-def>86_0.566667</Iteration_query-def> |
---|
3752 | <Iteration_query-len>30</Iteration_query-len> |
---|
3753 | <Iteration_hits> |
---|
3754 | <Hit> |
---|
3755 | <Hit_num>1</Hit_num> |
---|
3756 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3757 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3758 | <Hit_accession>0</Hit_accession> |
---|
3759 | <Hit_len>5528445</Hit_len> |
---|
3760 | <Hit_hsps> |
---|
3761 | <Hsp> |
---|
3762 | <Hsp_num>1</Hsp_num> |
---|
3763 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3764 | <Hsp_score>30</Hsp_score> |
---|
3765 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3766 | <Hsp_query-from>1</Hsp_query-from> |
---|
3767 | <Hsp_query-to>30</Hsp_query-to> |
---|
3768 | <Hsp_hit-from>163690</Hsp_hit-from> |
---|
3769 | <Hsp_hit-to>163719</Hsp_hit-to> |
---|
3770 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3771 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3772 | <Hsp_identity>30</Hsp_identity> |
---|
3773 | <Hsp_positive>30</Hsp_positive> |
---|
3774 | <Hsp_align-len>30</Hsp_align-len> |
---|
3775 | <Hsp_qseq>GGCAACGCAGGCGCATGATTCTGCTTGGAA</Hsp_qseq> |
---|
3776 | <Hsp_hseq>GGCAACGCAGGCGCATGATTCTGCTTGGAA</Hsp_hseq> |
---|
3777 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3778 | </Hsp> |
---|
3779 | </Hit_hsps> |
---|
3780 | </Hit> |
---|
3781 | </Iteration_hits> |
---|
3782 | <Iteration_stat> |
---|
3783 | <Statistics> |
---|
3784 | <Statistics_db-num>1</Statistics_db-num> |
---|
3785 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3786 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3787 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3788 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3789 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3790 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3791 | </Statistics> |
---|
3792 | </Iteration_stat> |
---|
3793 | </Iteration> |
---|
3794 | <Iteration> |
---|
3795 | <Iteration_iter-num>89</Iteration_iter-num> |
---|
3796 | <Iteration_query-ID>lcl|89_0</Iteration_query-ID> |
---|
3797 | <Iteration_query-def>88_0.533333</Iteration_query-def> |
---|
3798 | <Iteration_query-len>30</Iteration_query-len> |
---|
3799 | <Iteration_hits> |
---|
3800 | <Hit> |
---|
3801 | <Hit_num>1</Hit_num> |
---|
3802 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3803 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3804 | <Hit_accession>0</Hit_accession> |
---|
3805 | <Hit_len>5528445</Hit_len> |
---|
3806 | <Hit_hsps> |
---|
3807 | <Hsp> |
---|
3808 | <Hsp_num>1</Hsp_num> |
---|
3809 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3810 | <Hsp_score>30</Hsp_score> |
---|
3811 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3812 | <Hsp_query-from>1</Hsp_query-from> |
---|
3813 | <Hsp_query-to>30</Hsp_query-to> |
---|
3814 | <Hsp_hit-from>3071785</Hsp_hit-from> |
---|
3815 | <Hsp_hit-to>3071814</Hsp_hit-to> |
---|
3816 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3817 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3818 | <Hsp_identity>30</Hsp_identity> |
---|
3819 | <Hsp_positive>30</Hsp_positive> |
---|
3820 | <Hsp_align-len>30</Hsp_align-len> |
---|
3821 | <Hsp_qseq>CGTACCGGGCTGAAAGTAGAAGAGCGTTTC</Hsp_qseq> |
---|
3822 | <Hsp_hseq>CGTACCGGGCTGAAAGTAGAAGAGCGTTTC</Hsp_hseq> |
---|
3823 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3824 | </Hsp> |
---|
3825 | </Hit_hsps> |
---|
3826 | </Hit> |
---|
3827 | </Iteration_hits> |
---|
3828 | <Iteration_stat> |
---|
3829 | <Statistics> |
---|
3830 | <Statistics_db-num>1</Statistics_db-num> |
---|
3831 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3832 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3833 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3834 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3835 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3836 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3837 | </Statistics> |
---|
3838 | </Iteration_stat> |
---|
3839 | </Iteration> |
---|
3840 | <Iteration> |
---|
3841 | <Iteration_iter-num>91</Iteration_iter-num> |
---|
3842 | <Iteration_query-ID>lcl|91_0</Iteration_query-ID> |
---|
3843 | <Iteration_query-def>90_0.466667</Iteration_query-def> |
---|
3844 | <Iteration_query-len>30</Iteration_query-len> |
---|
3845 | <Iteration_hits> |
---|
3846 | <Hit> |
---|
3847 | <Hit_num>1</Hit_num> |
---|
3848 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3849 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3850 | <Hit_accession>0</Hit_accession> |
---|
3851 | <Hit_len>5528445</Hit_len> |
---|
3852 | <Hit_hsps> |
---|
3853 | <Hsp> |
---|
3854 | <Hsp_num>1</Hsp_num> |
---|
3855 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3856 | <Hsp_score>30</Hsp_score> |
---|
3857 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3858 | <Hsp_query-from>1</Hsp_query-from> |
---|
3859 | <Hsp_query-to>30</Hsp_query-to> |
---|
3860 | <Hsp_hit-from>692131</Hsp_hit-from> |
---|
3861 | <Hsp_hit-to>692160</Hsp_hit-to> |
---|
3862 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3863 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3864 | <Hsp_identity>30</Hsp_identity> |
---|
3865 | <Hsp_positive>30</Hsp_positive> |
---|
3866 | <Hsp_align-len>30</Hsp_align-len> |
---|
3867 | <Hsp_qseq>ATCACCGTTTCGCTAACCGGTACGTTTAAC</Hsp_qseq> |
---|
3868 | <Hsp_hseq>ATCACCGTTTCGCTAACCGGTACGTTTAAC</Hsp_hseq> |
---|
3869 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3870 | </Hsp> |
---|
3871 | </Hit_hsps> |
---|
3872 | </Hit> |
---|
3873 | </Iteration_hits> |
---|
3874 | <Iteration_stat> |
---|
3875 | <Statistics> |
---|
3876 | <Statistics_db-num>1</Statistics_db-num> |
---|
3877 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3878 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3879 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3880 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3881 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3882 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3883 | </Statistics> |
---|
3884 | </Iteration_stat> |
---|
3885 | </Iteration> |
---|
3886 | <Iteration> |
---|
3887 | <Iteration_iter-num>92</Iteration_iter-num> |
---|
3888 | <Iteration_query-ID>lcl|92_0</Iteration_query-ID> |
---|
3889 | <Iteration_query-def>91_0.566667</Iteration_query-def> |
---|
3890 | <Iteration_query-len>30</Iteration_query-len> |
---|
3891 | <Iteration_hits> |
---|
3892 | <Hit> |
---|
3893 | <Hit_num>1</Hit_num> |
---|
3894 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3895 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3896 | <Hit_accession>0</Hit_accession> |
---|
3897 | <Hit_len>5528445</Hit_len> |
---|
3898 | <Hit_hsps> |
---|
3899 | <Hsp> |
---|
3900 | <Hsp_num>1</Hsp_num> |
---|
3901 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3902 | <Hsp_score>30</Hsp_score> |
---|
3903 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3904 | <Hsp_query-from>1</Hsp_query-from> |
---|
3905 | <Hsp_query-to>30</Hsp_query-to> |
---|
3906 | <Hsp_hit-from>3307050</Hsp_hit-from> |
---|
3907 | <Hsp_hit-to>3307079</Hsp_hit-to> |
---|
3908 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3909 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3910 | <Hsp_identity>30</Hsp_identity> |
---|
3911 | <Hsp_positive>30</Hsp_positive> |
---|
3912 | <Hsp_align-len>30</Hsp_align-len> |
---|
3913 | <Hsp_qseq>TTCGCCCGGCAAGCTTACCCAACGCTTATC</Hsp_qseq> |
---|
3914 | <Hsp_hseq>TTCGCCCGGCAAGCTTACCCAACGCTTATC</Hsp_hseq> |
---|
3915 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3916 | </Hsp> |
---|
3917 | </Hit_hsps> |
---|
3918 | </Hit> |
---|
3919 | </Iteration_hits> |
---|
3920 | <Iteration_stat> |
---|
3921 | <Statistics> |
---|
3922 | <Statistics_db-num>1</Statistics_db-num> |
---|
3923 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3924 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3925 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3926 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3927 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3928 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3929 | </Statistics> |
---|
3930 | </Iteration_stat> |
---|
3931 | </Iteration> |
---|
3932 | <Iteration> |
---|
3933 | <Iteration_iter-num>95</Iteration_iter-num> |
---|
3934 | <Iteration_query-ID>lcl|95_0</Iteration_query-ID> |
---|
3935 | <Iteration_query-def>94_0.466667</Iteration_query-def> |
---|
3936 | <Iteration_query-len>30</Iteration_query-len> |
---|
3937 | <Iteration_hits> |
---|
3938 | <Hit> |
---|
3939 | <Hit_num>1</Hit_num> |
---|
3940 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3941 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3942 | <Hit_accession>0</Hit_accession> |
---|
3943 | <Hit_len>5528445</Hit_len> |
---|
3944 | <Hit_hsps> |
---|
3945 | <Hsp> |
---|
3946 | <Hsp_num>1</Hsp_num> |
---|
3947 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3948 | <Hsp_score>30</Hsp_score> |
---|
3949 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3950 | <Hsp_query-from>1</Hsp_query-from> |
---|
3951 | <Hsp_query-to>30</Hsp_query-to> |
---|
3952 | <Hsp_hit-from>1813009</Hsp_hit-from> |
---|
3953 | <Hsp_hit-to>1813038</Hsp_hit-to> |
---|
3954 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
3955 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
3956 | <Hsp_identity>30</Hsp_identity> |
---|
3957 | <Hsp_positive>30</Hsp_positive> |
---|
3958 | <Hsp_align-len>30</Hsp_align-len> |
---|
3959 | <Hsp_qseq>CCACGGTGATATCTGGTGCCATACTGATAA</Hsp_qseq> |
---|
3960 | <Hsp_hseq>CCACGGTGATATCTGGTGCCATACTGATAA</Hsp_hseq> |
---|
3961 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
3962 | </Hsp> |
---|
3963 | </Hit_hsps> |
---|
3964 | </Hit> |
---|
3965 | </Iteration_hits> |
---|
3966 | <Iteration_stat> |
---|
3967 | <Statistics> |
---|
3968 | <Statistics_db-num>1</Statistics_db-num> |
---|
3969 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
3970 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
3971 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
3972 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
3973 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
3974 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
3975 | </Statistics> |
---|
3976 | </Iteration_stat> |
---|
3977 | </Iteration> |
---|
3978 | <Iteration> |
---|
3979 | <Iteration_iter-num>97</Iteration_iter-num> |
---|
3980 | <Iteration_query-ID>lcl|97_0</Iteration_query-ID> |
---|
3981 | <Iteration_query-def>96_0.533333</Iteration_query-def> |
---|
3982 | <Iteration_query-len>30</Iteration_query-len> |
---|
3983 | <Iteration_hits> |
---|
3984 | <Hit> |
---|
3985 | <Hit_num>1</Hit_num> |
---|
3986 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
3987 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
3988 | <Hit_accession>0</Hit_accession> |
---|
3989 | <Hit_len>5528445</Hit_len> |
---|
3990 | <Hit_hsps> |
---|
3991 | <Hsp> |
---|
3992 | <Hsp_num>1</Hsp_num> |
---|
3993 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
3994 | <Hsp_score>30</Hsp_score> |
---|
3995 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
3996 | <Hsp_query-from>1</Hsp_query-from> |
---|
3997 | <Hsp_query-to>30</Hsp_query-to> |
---|
3998 | <Hsp_hit-from>573782</Hsp_hit-from> |
---|
3999 | <Hsp_hit-to>573811</Hsp_hit-to> |
---|
4000 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
4001 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
4002 | <Hsp_identity>30</Hsp_identity> |
---|
4003 | <Hsp_positive>30</Hsp_positive> |
---|
4004 | <Hsp_align-len>30</Hsp_align-len> |
---|
4005 | <Hsp_qseq>TTGCCGGGAAGAGAGATATCAATGGCAGGC</Hsp_qseq> |
---|
4006 | <Hsp_hseq>TTGCCGGGAAGAGAGATATCAATGGCAGGC</Hsp_hseq> |
---|
4007 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
4008 | </Hsp> |
---|
4009 | </Hit_hsps> |
---|
4010 | </Hit> |
---|
4011 | </Iteration_hits> |
---|
4012 | <Iteration_stat> |
---|
4013 | <Statistics> |
---|
4014 | <Statistics_db-num>1</Statistics_db-num> |
---|
4015 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
4016 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
4017 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
4018 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
4019 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
4020 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
4021 | </Statistics> |
---|
4022 | </Iteration_stat> |
---|
4023 | </Iteration> |
---|
4024 | <Iteration> |
---|
4025 | <Iteration_iter-num>98</Iteration_iter-num> |
---|
4026 | <Iteration_query-ID>lcl|98_0</Iteration_query-ID> |
---|
4027 | <Iteration_query-def>97_0.566667</Iteration_query-def> |
---|
4028 | <Iteration_query-len>30</Iteration_query-len> |
---|
4029 | <Iteration_hits> |
---|
4030 | <Hit> |
---|
4031 | <Hit_num>1</Hit_num> |
---|
4032 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
4033 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
4034 | <Hit_accession>0</Hit_accession> |
---|
4035 | <Hit_len>5528445</Hit_len> |
---|
4036 | <Hit_hsps> |
---|
4037 | <Hsp> |
---|
4038 | <Hsp_num>1</Hsp_num> |
---|
4039 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
4040 | <Hsp_score>30</Hsp_score> |
---|
4041 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
4042 | <Hsp_query-from>1</Hsp_query-from> |
---|
4043 | <Hsp_query-to>30</Hsp_query-to> |
---|
4044 | <Hsp_hit-from>3570563</Hsp_hit-from> |
---|
4045 | <Hsp_hit-to>3570592</Hsp_hit-to> |
---|
4046 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
4047 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
4048 | <Hsp_identity>30</Hsp_identity> |
---|
4049 | <Hsp_positive>30</Hsp_positive> |
---|
4050 | <Hsp_align-len>30</Hsp_align-len> |
---|
4051 | <Hsp_qseq>TGCGCCGCCGGATTGTTGCTCAACATGCTT</Hsp_qseq> |
---|
4052 | <Hsp_hseq>TGCGCCGCCGGATTGTTGCTCAACATGCTT</Hsp_hseq> |
---|
4053 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
4054 | </Hsp> |
---|
4055 | </Hit_hsps> |
---|
4056 | </Hit> |
---|
4057 | </Iteration_hits> |
---|
4058 | <Iteration_stat> |
---|
4059 | <Statistics> |
---|
4060 | <Statistics_db-num>1</Statistics_db-num> |
---|
4061 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
4062 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
4063 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
4064 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
4065 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
4066 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
4067 | </Statistics> |
---|
4068 | </Iteration_stat> |
---|
4069 | </Iteration> |
---|
4070 | <Iteration> |
---|
4071 | <Iteration_iter-num>99</Iteration_iter-num> |
---|
4072 | <Iteration_query-ID>lcl|99_0</Iteration_query-ID> |
---|
4073 | <Iteration_query-def>98_0.366667</Iteration_query-def> |
---|
4074 | <Iteration_query-len>30</Iteration_query-len> |
---|
4075 | <Iteration_hits> |
---|
4076 | <Hit> |
---|
4077 | <Hit_num>1</Hit_num> |
---|
4078 | <Hit_id>gnl|BL_ORD_ID|0</Hit_id> |
---|
4079 | <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> |
---|
4080 | <Hit_accession>0</Hit_accession> |
---|
4081 | <Hit_len>5528445</Hit_len> |
---|
4082 | <Hit_hsps> |
---|
4083 | <Hsp> |
---|
4084 | <Hsp_num>1</Hsp_num> |
---|
4085 | <Hsp_bit-score>59.96</Hsp_bit-score> |
---|
4086 | <Hsp_score>30</Hsp_score> |
---|
4087 | <Hsp_evalue>8.38112e-11</Hsp_evalue> |
---|
4088 | <Hsp_query-from>1</Hsp_query-from> |
---|
4089 | <Hsp_query-to>30</Hsp_query-to> |
---|
4090 | <Hsp_hit-from>4545136</Hsp_hit-from> |
---|
4091 | <Hsp_hit-to>4545165</Hsp_hit-to> |
---|
4092 | <Hsp_query-frame>1</Hsp_query-frame> |
---|
4093 | <Hsp_hit-frame>1</Hsp_hit-frame> |
---|
4094 | <Hsp_identity>30</Hsp_identity> |
---|
4095 | <Hsp_positive>30</Hsp_positive> |
---|
4096 | <Hsp_align-len>30</Hsp_align-len> |
---|
4097 | <Hsp_qseq>AACGCGCTAACCGCCAATAATAACAAAATT</Hsp_qseq> |
---|
4098 | <Hsp_hseq>AACGCGCTAACCGCCAATAATAACAAAATT</Hsp_hseq> |
---|
4099 | <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> |
---|
4100 | </Hsp> |
---|
4101 | </Hit_hsps> |
---|
4102 | </Hit> |
---|
4103 | </Iteration_hits> |
---|
4104 | <Iteration_stat> |
---|
4105 | <Statistics> |
---|
4106 | <Statistics_db-num>1</Statistics_db-num> |
---|
4107 | <Statistics_db-len>5528445</Statistics_db-len> |
---|
4108 | <Statistics_hsp-len>0</Statistics_hsp-len> |
---|
4109 | <Statistics_eff-space>0</Statistics_eff-space> |
---|
4110 | <Statistics_kappa>0.711</Statistics_kappa> |
---|
4111 | <Statistics_lambda>1.374</Statistics_lambda> |
---|
4112 | <Statistics_entropy>1.31</Statistics_entropy> |
---|
4113 | </Statistics> |
---|
4114 | </Iteration_stat> |
---|
4115 | </Iteration> |
---|
4116 | </BlastOutput_iterations> |
---|
4117 | </BlastOutput> |
---|