""" This script fixes a problem introduced in 0010_hda_display_at_atuhz_table.py. MySQL has a name length limit and thus the index "ix_hdadaa_history_dataset_association_id" has to be manually created. """ from sqlalchemy import * from sqlalchemy.orm import * from sqlalchemy.exc import * from migrate import * from migrate.changeset import * import datetime now = datetime.datetime.utcnow import sys, logging log = logging.getLogger( __name__ ) log.setLevel(logging.DEBUG) handler = logging.StreamHandler( sys.stdout ) format = "%(name)s %(levelname)s %(asctime)s %(message)s" formatter = logging.Formatter( format ) handler.setFormatter( formatter ) log.addHandler( handler ) # Need our custom types, but don't import anything else from model from galaxy.model.custom_types import * metadata = MetaData( migrate_engine ) db_session = scoped_session( sessionmaker( bind=migrate_engine, autoflush=False, autocommit=True ) ) def display_migration_details(): print "========================================" print "This script fixes a problem introduced in the previous migration script ( 9->10 ). MySQL" print "has a name length limit and thus the index 'ix_hdadaa_history_dataset_association_id' has" print "to be manually created." print "========================================" HistoryDatasetAssociationDisplayAtAuthorization_table = Table( "history_dataset_association_display_at_authorization", metadata, Column( "id", Integer, primary_key=True ), Column( "create_time", DateTime, default=now ), Column( "update_time", DateTime, index=True, default=now, onupdate=now ), Column( "history_dataset_association_id", Integer, ForeignKey( "history_dataset_association.id" ), index=True ), Column( "user_id", Integer, ForeignKey( "galaxy_user.id" ), index=True ), Column( "site", TrimmedString( 255 ) ) ) def upgrade(): display_migration_details() if migrate_engine.name == 'mysql': # Load existing tables metadata.reflect() i = Index( "ix_hdadaa_history_dataset_association_id", HistoryDatasetAssociationDisplayAtAuthorization_table.c.history_dataset_association_id ) try: i.create() except Exception, e: log.debug( "Adding index 'ix_hdadaa_history_dataset_association_id' to table 'history_dataset_association_display_at_authorization' table failed: %s" % str( e ) ) def downgrade(): if migrate_engine.name == 'mysql': # Load existing tables metadata.reflect() i = Index( "ix_hdadaa_history_dataset_association_id", HistoryDatasetAssociationDisplayAtAuthorization_table.c.history_dataset_association_id ) try: i.drop() except Exception, e: log.debug( "Removing index 'ix_hdadaa_history_dataset_association_id' from table 'history_dataset_association_display_at_authorization' table failed: %s" % str( e ) )