from sqlalchemy import * from sqlalchemy.orm import * from sqlalchemy.exc import * from migrate import * from migrate.changeset import * import datetime now = datetime.datetime.utcnow import sys, logging # Need our custom types, but don't import anything else from model from galaxy.model.custom_types import * log = logging.getLogger( __name__ ) log.setLevel(logging.DEBUG) handler = logging.StreamHandler( sys.stdout ) format = "%(name)s %(levelname)s %(asctime)s %(message)s" formatter = logging.Formatter( format ) handler.setFormatter( formatter ) log.addHandler( handler ) metadata = MetaData( migrate_engine ) db_session = scoped_session( sessionmaker( bind=migrate_engine, autoflush=False, autocommit=True ) ) def display_migration_details(): print "========================================" print """This script creates a request.folder_id column which is a foreign key to the library_folder table. This also adds a 'type' and 'layout' column to the form_definition table.""" print "========================================" def upgrade(): display_migration_details() # Load existing tables metadata.reflect() # Create the folder_id column try: Request_table = Table( "request", metadata, autoload=True ) except NoSuchTableError: Request_table = None log.debug( "Failed loading table request" ) if Request_table: try: col = Column( "folder_id", Integer, index=True ) col.create( Request_table ) assert col is Request_table.c.folder_id except Exception, e: log.debug( "Adding column 'folder_id' to request table failed: %s" % ( str( e ) ) ) try: LibraryFolder_table = Table( "library_folder", metadata, autoload=True ) except NoSuchTableError: LibraryFolder_table = None log.debug( "Failed loading table library_folder" ) # Add 1 foreign key constraint to the library_folder table if Request_table and LibraryFolder_table: try: cons = ForeignKeyConstraint( [Request_table.c.folder_id], [LibraryFolder_table.c.id], name='request_folder_id_fk' ) # Create the constraint cons.create() except Exception, e: log.debug( "Adding foreign key constraint 'request_folder_id_fk' to table 'library_folder' failed: %s" % ( str( e ) ) ) # Create the type column in form_definition try: FormDefinition_table = Table( "form_definition", metadata, autoload=True ) except NoSuchTableError: FormDefinition_table = None log.debug( "Failed loading table form_definition" ) if FormDefinition_table: try: col = Column( "type", TrimmedString( 255 ), index=True ) col.create( FormDefinition_table ) assert col is FormDefinition_table.c.type except Exception, e: log.debug( "Adding column 'type' to form_definition table failed: %s" % ( str( e ) ) ) try: col = Column( "layout", JSONType()) col.create( FormDefinition_table ) assert col is FormDefinition_table.c.layout except Exception, e: log.debug( "Adding column 'layout' to form_definition table failed: %s" % ( str( e ) ) ) def downgrade(): pass