""" Add a state column to the history_dataset_association and library_dataset_dataset_association table. """ from sqlalchemy import * from sqlalchemy.orm import * from sqlalchemy.exc import * from migrate import * from migrate.changeset import * from galaxy.model.custom_types import * import datetime now = datetime.datetime.utcnow import sys, logging log = logging.getLogger( __name__ ) log.setLevel(logging.DEBUG) handler = logging.StreamHandler( sys.stdout ) format = "%(name)s %(levelname)s %(asctime)s %(message)s" formatter = logging.Formatter( format ) handler.setFormatter( formatter ) log.addHandler( handler ) metadata = MetaData( migrate_engine ) db_session = scoped_session( sessionmaker( bind=migrate_engine, autoflush=False, autocommit=True ) ) DATASET_INSTANCE_TABLE_NAMES = [ 'history_dataset_association', 'library_dataset_dataset_association' ] def upgrade(): print __doc__ metadata.reflect() dataset_instance_tables = [] for table_name in DATASET_INSTANCE_TABLE_NAMES: try: dataset_instance_tables.append( ( table_name, Table( table_name, metadata, autoload=True ) ) ) except NoSuchTableError: log.debug( "Failed loading table %s" % table_name ) if dataset_instance_tables: for table_name, dataset_instance_table in dataset_instance_tables: try: col = Column( "state", TrimmedString( 64 ), index=True, nullable=True ) col.create( dataset_instance_table ) assert col is dataset_instance_table.c.state except Exception, e: log.debug( "Adding column 'state' to %s table failed: %s" % ( table_name, str( e ) ) ) try: i = Index( "ix_%s_state" % table_name, dataset_instance_table.c.state ) i.create() except Exception, e: log.debug( "Adding index 'ix_%s_state' failed: %s" % ( table_name, str( e ) ) ) def downgrade(): metadata.reflect() dataset_instance_tables = [] for table_name in DATASET_INSTANCE_TABLE_NAMES: try: dataset_instance_tables.append( ( table_name, Table( table_name, metadata, autoload=True ) ) ) except NoSuchTableError: log.debug( "Failed loading table %s" % table_name ) if dataset_instance_tables: for table_name, dataset_instance_table in dataset_instance_tables: try: col = dataset_instance_table.c.state col.drop() except Exception, e: log.debug( "Dropping column 'state' from %s table failed: %s" % ( table_name, str( e ) ) )