[2] | 1 | """ |
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| 2 | Migration script to create initial tables. |
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| 3 | """ |
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| 4 | |
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| 5 | from sqlalchemy import * |
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| 6 | from migrate import * |
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| 7 | |
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| 8 | import datetime |
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| 9 | now = datetime.datetime.utcnow |
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| 10 | |
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| 11 | # Need our custom types, but don't import anything else from model |
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| 12 | from galaxy.model.custom_types import * |
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| 13 | |
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| 14 | import logging |
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| 15 | log = logging.getLogger( __name__ ) |
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| 16 | |
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| 17 | metadata = MetaData( migrate_engine ) |
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| 18 | |
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| 19 | User_table = Table( "galaxy_user", metadata, |
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| 20 | Column( "id", Integer, primary_key=True), |
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| 21 | Column( "create_time", DateTime, default=now ), |
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| 22 | Column( "update_time", DateTime, default=now, onupdate=now ), |
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| 23 | Column( "email", TrimmedString( 255 ), nullable=False ), |
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| 24 | Column( "username", String( 255 ), index=True ), |
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| 25 | Column( "password", TrimmedString( 40 ), nullable=False ), |
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| 26 | Column( "external", Boolean, default=False ), |
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| 27 | Column( "deleted", Boolean, index=True, default=False ), |
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| 28 | Column( "purged", Boolean, index=True, default=False ) ) |
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| 29 | |
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| 30 | Group_table = Table( "galaxy_group", metadata, |
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| 31 | Column( "id", Integer, primary_key=True ), |
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| 32 | Column( "create_time", DateTime, default=now ), |
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| 33 | Column( "update_time", DateTime, default=now, onupdate=now ), |
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| 34 | Column( "name", String( 255 ), index=True, unique=True ), |
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| 35 | Column( "deleted", Boolean, index=True, default=False ) ) |
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| 36 | |
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| 37 | Role_table = Table( "role", metadata, |
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| 38 | Column( "id", Integer, primary_key=True ), |
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| 39 | Column( "create_time", DateTime, default=now ), |
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| 40 | Column( "update_time", DateTime, default=now, onupdate=now ), |
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| 41 | Column( "name", String( 255 ), index=True, unique=True ), |
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| 42 | Column( "description", TEXT ), |
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| 43 | Column( "type", String( 40 ), index=True ), |
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| 44 | Column( "deleted", Boolean, index=True, default=False ) ) |
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| 45 | |
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| 46 | UserGroupAssociation_table = Table( "user_group_association", metadata, |
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| 47 | Column( "id", Integer, primary_key=True ), |
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| 48 | Column( "user_id", Integer, ForeignKey( "galaxy_user.id" ), index=True ), |
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| 49 | Column( "group_id", Integer, ForeignKey( "galaxy_group.id" ), index=True ), |
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| 50 | Column( "create_time", DateTime, default=now ), |
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| 51 | Column( "update_time", DateTime, default=now, onupdate=now ) ) |
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| 52 | |
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| 53 | UserRoleAssociation_table = Table( "user_role_association", metadata, |
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| 54 | Column( "id", Integer, primary_key=True ), |
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| 55 | Column( "user_id", Integer, ForeignKey( "galaxy_user.id" ), index=True ), |
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| 56 | Column( "role_id", Integer, ForeignKey( "role.id" ), index=True ), |
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| 57 | Column( "create_time", DateTime, default=now ), |
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| 58 | Column( "update_time", DateTime, default=now, onupdate=now ) ) |
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| 59 | |
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| 60 | GroupRoleAssociation_table = Table( "group_role_association", metadata, |
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| 61 | Column( "id", Integer, primary_key=True ), |
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| 62 | Column( "group_id", Integer, ForeignKey( "galaxy_group.id" ), index=True ), |
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| 63 | Column( "role_id", Integer, ForeignKey( "role.id" ), index=True ), |
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| 64 | Column( "create_time", DateTime, default=now ), |
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| 65 | Column( "update_time", DateTime, default=now, onupdate=now ) ) |
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| 66 | |
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| 67 | GalaxySession_table = Table( "galaxy_session", metadata, |
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| 68 | Column( "id", Integer, primary_key=True ), |
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| 69 | Column( "create_time", DateTime, default=now ), |
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| 70 | Column( "update_time", DateTime, default=now, onupdate=now ), |
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| 71 | Column( "user_id", Integer, ForeignKey( "galaxy_user.id" ), index=True, nullable=True ), |
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| 72 | Column( "remote_host", String( 255 ) ), |
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| 73 | Column( "remote_addr", String( 255 ) ), |
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| 74 | Column( "referer", TEXT ), |
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| 75 | Column( "session_key", TrimmedString( 255 ), index=True, unique=True ), # unique 128 bit random number coerced to a string |
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| 76 | Column( "is_valid", Boolean, default=False ), |
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| 77 | Column( "prev_session_id", Integer ) # saves a reference to the previous session so we have a way to chain them together |
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| 78 | ) |
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| 79 | |
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| 80 | Tool_table = Table( "tool", metadata, |
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| 81 | Column( "id", Integer, primary_key=True ), |
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| 82 | Column( "guid", TrimmedString( 255 ), index=True, unique=True ), |
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| 83 | Column( "tool_id", TrimmedString( 255 ), index=True ), |
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| 84 | Column( "create_time", DateTime, default=now ), |
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| 85 | Column( "update_time", DateTime, default=now, onupdate=now ), |
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| 86 | Column( "newer_version_id", Integer, ForeignKey( "tool.id" ), nullable=True ), |
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| 87 | Column( "name", TrimmedString( 255 ), index=True ), |
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| 88 | Column( "description" , TEXT ), |
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| 89 | Column( "user_description" , TEXT ), |
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| 90 | Column( "version", TrimmedString( 255 ) ), |
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| 91 | Column( "user_id", Integer, ForeignKey( "galaxy_user.id" ), index=True ), |
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| 92 | Column( "external_filename" , TEXT ), |
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| 93 | Column( "deleted", Boolean, index=True, default=False ) ) |
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| 94 | |
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| 95 | Event_table = Table( 'event', metadata, |
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| 96 | Column( "id", Integer, primary_key=True ), |
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| 97 | Column( "create_time", DateTime, default=now ), |
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| 98 | Column( "update_time", DateTime, default=now, onupdate=now ), |
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| 99 | Column( "state", TrimmedString( 255 ), index=True ), |
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| 100 | Column( "comment", TEXT ) ) |
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| 101 | |
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| 102 | ToolEventAssociation_table = Table( "tool_event_association", metadata, |
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| 103 | Column( "id", Integer, primary_key=True ), |
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| 104 | Column( "tool_id", Integer, ForeignKey( "tool.id" ), index=True ), |
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| 105 | Column( "event_id", Integer, ForeignKey( "event.id" ), index=True ) ) |
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| 106 | |
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| 107 | Category_table = Table( "category", metadata, |
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| 108 | Column( "id", Integer, primary_key=True ), |
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| 109 | Column( "create_time", DateTime, default=now ), |
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| 110 | Column( "update_time", DateTime, default=now, onupdate=now ), |
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| 111 | Column( "name", TrimmedString( 255 ), index=True, unique=True ), |
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| 112 | Column( "description" , TEXT ), |
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| 113 | Column( "deleted", Boolean, index=True, default=False ) ) |
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| 114 | |
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| 115 | ToolCategoryAssociation_table = Table( "tool_category_association", metadata, |
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| 116 | Column( "id", Integer, primary_key=True ), |
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| 117 | Column( "tool_id", Integer, ForeignKey( "tool.id" ), index=True ), |
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| 118 | Column( "category_id", Integer, ForeignKey( "category.id" ), index=True ) ) |
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| 119 | |
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| 120 | Tag_table = Table( "tag", metadata, |
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| 121 | Column( "id", Integer, primary_key=True ), |
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| 122 | Column( "type", Integer ), |
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| 123 | Column( "parent_id", Integer, ForeignKey( "tag.id" ) ), |
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| 124 | Column( "name", TrimmedString(255) ), |
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| 125 | UniqueConstraint( "name" ) ) |
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| 126 | |
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| 127 | ToolTagAssociation_table = Table( "tool_tag_association", metadata, |
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| 128 | Column( "id", Integer, primary_key=True ), |
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| 129 | Column( "tool_id", Integer, ForeignKey( "tool.id" ), index=True ), |
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| 130 | Column( "tag_id", Integer, ForeignKey( "tag.id" ), index=True ), |
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| 131 | Column( "user_id", Integer, ForeignKey( "galaxy_user.id" ), index=True ), |
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| 132 | Column( "user_tname", TrimmedString(255), index=True), |
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| 133 | Column( "value", TrimmedString(255), index=True), |
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| 134 | Column( "user_value", TrimmedString(255), index=True) ) |
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| 135 | |
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| 136 | ToolAnnotationAssociation_table = Table( "tool_annotation_association", metadata, |
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| 137 | Column( "id", Integer, primary_key=True ), |
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| 138 | Column( "tool_id", Integer, ForeignKey( "tool.id" ), index=True ), |
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| 139 | Column( "user_id", Integer, ForeignKey( "galaxy_user.id" ), index=True ), |
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| 140 | Column( "annotation", TEXT, index=True) ) |
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| 141 | |
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| 142 | def upgrade(): |
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| 143 | print __doc__ |
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| 144 | metadata.create_all() |
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| 145 | |
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| 146 | def downgrade(): |
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| 147 | # Operations to reverse the above upgrade go here. |
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| 148 | pass |
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