import sys, os.path, logging new_path = [ os.path.join( os.getcwd(), "lib" ) ] new_path.extend( sys.path[1:] ) # remove scripts/ from the path sys.path = new_path from galaxy import eggs import pkg_resources pkg_resources.require( "sqlalchemy-migrate" ) from migrate.versioning.shell import main from ConfigParser import SafeConfigParser log = logging.getLogger( __name__ ) if sys.argv[-1] in [ 'community' ]: # Need to pop the last arg so the command line args will be correct # for sqlalchemy-migrate webapp = sys.argv.pop() config_file = 'community_wsgi.ini' repo = 'lib/galaxy/webapps/community/model/migrate' else: config_file = 'universe_wsgi.ini' repo = 'lib/galaxy/model/migrate' cp = SafeConfigParser() cp.read( config_file ) if cp.has_option( "app:main", "database_connection" ): db_url = cp.get( "app:main", "database_connection" ) elif cp.has_option( "app:main", "database_file" ): db_url = "sqlite:///%s?isolation_level=IMMEDIATE" % cp.get( "app:main", "database_file" ) else: db_url = "sqlite:///./database/universe.sqlite?isolation_level=IMMEDIATE" dialect_to_egg = { "sqlite" : "pysqlite>=2", "postgres" : "psycopg2", "mysql" : "MySQL_python" } dialect = ( db_url.split( ':', 1 ) )[0] try: egg = dialect_to_egg[dialect] try: pkg_resources.require( egg ) log.debug( "%s egg successfully loaded for %s dialect" % ( egg, dialect ) ) except: # If the module is in the path elsewhere (i.e. non-egg), it'll still load. log.warning( "%s egg not found, but an attempt will be made to use %s anyway" % ( egg, dialect ) ) except KeyError: # Let this go, it could possibly work with db's we don't support log.error( "database_connection contains an unknown SQLAlchemy database dialect: %s" % dialect ) main( repository=repo, url=db_url )