[2] | 1 | ## |
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| 2 | ## Generate the content block for a myExperiment request. |
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| 3 | ## |
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| 4 | <%! |
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| 5 | from xml.sax.saxutils import escape |
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| 6 | import textwrap, base64 |
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| 7 | %> |
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| 8 | <galaxy_json> |
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| 9 | ${workflow_dict_packed} |
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| 10 | </galaxy_json> |
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| 11 | <steps> |
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| 12 | %for step_num, step in workflow_steps.items(): |
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| 13 | <step> |
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| 14 | <id>${step_num}</id> |
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| 15 | <name>${step['name']}</name> |
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| 16 | <tool>${step['tool_id']}</tool> |
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| 17 | <description>${escape( step['annotation'] )}</description> |
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| 18 | <inputs> |
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| 19 | %for input in step['inputs']: |
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| 20 | <input> |
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| 21 | <name>${escape( input['name'] )}</name> |
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| 22 | <description>${escape( input['description'] )}</description> |
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| 23 | </input> |
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| 24 | %endfor |
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| 25 | </inputs> |
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| 26 | <outputs> |
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| 27 | %for output in step['outputs']: |
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| 28 | <output> |
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| 29 | <name>${escape( output['name'] )}</name> |
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| 30 | <type>${output['type']}</type> |
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| 31 | </output> |
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| 32 | %endfor |
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| 33 | </outputs> |
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| 34 | </step> |
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| 35 | %endfor |
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| 36 | </steps> |
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| 37 | <connections> |
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| 38 | %for step_num, step in workflow_steps.items(): |
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| 39 | %for input_name, input_connection in step['input_connections'].items(): |
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| 40 | <connection> |
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| 41 | <source_id>${input_connection['id']}</source_id> |
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| 42 | <source_output>${input_connection['output_name']}</source_output> |
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| 43 | <sink_id>${step_num}</sink_id> |
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| 44 | <sink_input>${input_name}</sink_input> |
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| 45 | </connection> |
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| 46 | %endfor |
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| 47 | %endfor |
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| 48 | </connections> |
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