[2] | 1 | <%inherit file="/base.mako"/> |
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| 2 | |
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| 3 | <%def name="javascripts()"> |
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| 4 | ${parent.javascripts()} |
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| 5 | ${h.js( "jquery.autocomplete" )} |
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| 6 | <script type="text/javascript"> |
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| 7 | $( function() { |
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| 8 | $( "select[refresh_on_change='true']").change( function() { |
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| 9 | $( "#tool_form" ).submit(); |
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| 10 | }); |
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| 11 | }); |
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| 12 | </script> |
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| 13 | </%def> |
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| 14 | |
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| 15 | <%def name="stylesheets()"> |
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| 16 | ${parent.stylesheets()} |
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| 17 | ${h.css( "autocomplete_tagging" )} |
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| 18 | <style type="text/css"> |
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| 19 | div.toolForm{ |
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| 20 | margin-top: 10px; |
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| 21 | margin-bottom: 10px; |
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| 22 | } |
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| 23 | </style> |
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| 24 | </%def> |
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| 25 | |
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| 26 | <% |
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| 27 | from galaxy.tools.parameters import DataToolParameter, RuntimeValue |
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| 28 | from galaxy.jobs.actions.post import ActionBox |
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| 29 | %> |
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| 30 | |
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| 31 | <%def name="do_inputs( inputs, values, errors, prefix, step, other_values = None )"> |
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| 32 | %if other_values is None: |
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| 33 | <% other_values = values %> |
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| 34 | %endif |
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| 35 | %for input_index, input in enumerate( inputs.itervalues() ): |
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| 36 | %if input.type == "repeat": |
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| 37 | <div class="repeat-group"> |
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| 38 | <div class="form-title-row"><b>${input.title_plural}</b></div> |
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| 39 | <% repeat_values = values[input.name] %> |
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| 40 | %for i in range( len( repeat_values ) ): |
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| 41 | %if input.name in errors: |
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| 42 | <% rep_errors = errors[input.name][i] %> |
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| 43 | %else: |
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| 44 | <% rep_errors = dict() %> |
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| 45 | %endif |
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| 46 | <div class="repeat-group-item"> |
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| 47 | <% index = repeat_values[i]['__index__'] %> |
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| 48 | <div class="form-title-row"><b>${input.title} ${i + 1}</b></div> |
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| 49 | ${do_inputs( input.inputs, repeat_values[ i ], rep_errors, prefix + input.name + "_" + str(index) + "|", step, other_values )} |
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| 50 | ## <div class="form-row"><input type="submit" name="${step.id}|${prefix}${input.name}_${i}_remove" value="Remove ${input.title} ${i+1}" /></div> |
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| 51 | </div> |
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| 52 | %endfor |
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| 53 | ## <div class="form-row"><input type="submit" name="${step.id}|${prefix}${input.name}_add" value="Add new ${input.title}" /></div> |
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| 54 | </div> |
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| 55 | %elif input.type == "conditional": |
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| 56 | <% group_values = values[input.name] %> |
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| 57 | <% current_case = group_values['__current_case__'] %> |
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| 58 | <% new_prefix = prefix + input.name + "|" %> |
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| 59 | <% group_errors = errors.get( input.name, {} ) %> |
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| 60 | ${row_for_param( input.test_param, group_values[ input.test_param.name ], other_values, group_errors, prefix, step )} |
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| 61 | ${do_inputs( input.cases[ current_case ].inputs, group_values, group_errors, new_prefix, step, other_values )} |
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| 62 | %else: |
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| 63 | ${row_for_param( input, values[ input.name ], other_values, errors, prefix, step )} |
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| 64 | %endif |
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| 65 | %endfor |
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| 66 | </%def> |
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| 67 | |
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| 68 | <%def name="row_for_param( param, value, other_values, error_dict, prefix, step )"> |
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| 69 | ## -- ${param.name} -- ${step.state.inputs} -- |
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| 70 | %if error_dict.has_key( param.name ): |
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| 71 | <% cls = "form-row form-row-error" %> |
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| 72 | %else: |
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| 73 | <% cls = "form-row" %> |
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| 74 | %endif |
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| 75 | <div class="${cls}"> |
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| 76 | <label>${param.get_label()}</label> |
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| 77 | <div> |
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| 78 | %if isinstance( param, DataToolParameter ): |
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| 79 | %if ( prefix + param.name ) in step.input_connections_by_name: |
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| 80 | <% |
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| 81 | conn = step.input_connections_by_name[ prefix + param.name ] |
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| 82 | %> |
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| 83 | Output dataset '${conn.output_name}' from step ${int(conn.output_step.order_index)+1} |
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| 84 | %else: |
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| 85 | ## FIXME: Initialize in the controller |
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| 86 | <% |
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| 87 | if value is None: |
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| 88 | value = other_values[ param.name ] = param.get_initial_value( t, other_values ) |
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| 89 | %> |
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| 90 | ${param.get_html_field( t, value, other_values ).get_html( str(step.id) + "|" + prefix )} |
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| 91 | <input type="hidden" name="${step.id}|__force_update__${prefix}${param.name}" value="true" /> |
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| 92 | %endif |
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| 93 | %elif isinstance( value, RuntimeValue ) or ( str(step.id) + '|__runtime__' + prefix + param.name ) in incoming: |
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| 94 | ## On the first load we may see a RuntimeValue, so we write |
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| 95 | ## an input field using the initial value for the param. |
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| 96 | ## Subsequents posts will no longer have the runtime value |
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| 97 | ## (since an actualy value will be posted) so we add a hidden |
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| 98 | ## field so we know to continue drawing form for this param. |
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| 99 | ## FIXME: This logic shouldn't be in the template. The |
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| 100 | ## controller should go through the inputs on the first |
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| 101 | ## load, fill in initial values where needed, and mark |
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| 102 | ## all that are runtime modifiable in some way. |
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| 103 | <% value = other_values[ param.name ] = param.get_initial_value( t, other_values ) %> |
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| 104 | ${param.get_html_field( t, value, other_values ).get_html( str(step.id) + "|" + prefix )} |
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| 105 | <input type="hidden" name="${step.id}|__runtime__${prefix}${param.name}" value="true" /> |
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| 106 | %else: |
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| 107 | ${param.value_to_display_text( value, app )} |
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| 108 | %endif |
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| 109 | </div> |
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| 110 | %if step.upgrade_messages and param.name in step.upgrade_messages: |
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| 111 | <div class="warningmark">${step.upgrade_messages[param.name]}</div> |
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| 112 | %endif |
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| 113 | %if error_dict.has_key( param.name ): |
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| 114 | <div style="color: red; font-weight: bold; padding-top: 1px; padding-bottom: 3px;"> |
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| 115 | <div style="width: 300px;"><img style="vertical-align: middle;" src="${h.url_for('/static/style/error_small.png')}"> <span style="vertical-align: middle;">${error_dict[param.name]}</span></div> |
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| 116 | </div> |
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| 117 | %endif |
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| 118 | <div style="clear: both"></div> |
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| 119 | </div> |
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| 120 | </%def> |
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| 121 | |
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| 122 | <h2>Running workflow "${h.to_unicode( workflow.name )}"</h2> |
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| 123 | |
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| 124 | %if has_upgrade_messages: |
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| 125 | <div class="warningmessage"> |
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| 126 | Problems were encourered when loading this workflow, likely due to tool |
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| 127 | version changes. Missing parameter values have been replaced with default. |
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| 128 | Please review the parameter values below. |
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| 129 | </div> |
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| 130 | %endif |
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| 131 | |
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| 132 | <form id="tool_form" name="tool_form" method="POST"> |
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| 133 | ## <input type="hidden" name="workflow_name" value="${h.to_unicode( workflow.name ) | h}" /> |
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| 134 | %for i, step in enumerate( steps ): |
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| 135 | %if step.type == 'tool' or step.type is None: |
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| 136 | <% tool = app.toolbox.tools_by_id[step.tool_id] %> |
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| 137 | <input type="hidden" name="${step.id}|tool_state" value="${step.state.encode( tool, app )}"> |
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| 138 | <div class="toolForm"> |
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| 139 | <div class="toolFormTitle">Step ${int(step.order_index)+1}: ${tool.name}</div> |
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| 140 | <div class="toolFormBody"> |
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| 141 | ${do_inputs( tool.inputs, step.state.inputs, errors.get( step.id, dict() ), "", step )} |
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| 142 | % if step.post_job_actions: |
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| 143 | <hr/> |
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| 144 | <div class='form-row'> |
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| 145 | % if len(step.post_job_actions) > 1: |
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| 146 | <label>Actions:</label> |
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| 147 | % else: |
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| 148 | <label>Action:</label> |
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| 149 | % endif |
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| 150 | ${'<br/>'.join([ActionBox.get_short_str(pja) for pja in step.post_job_actions])} |
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| 151 | </div> |
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| 152 | % endif |
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| 153 | % if step.annotations: |
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| 154 | <hr/> |
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| 155 | <div class='form-row'> |
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| 156 | <label>Annotation:</label> ${h.to_unicode( step.annotations[0].annotation )} |
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| 157 | </div> |
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| 158 | % endif |
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| 159 | </div> |
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| 160 | </div> |
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| 161 | %else: |
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| 162 | <% module = step.module %> |
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| 163 | <input type="hidden" name="${step.id}|tool_state" value="${module.encode_runtime_state( t, step.state )}"> |
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| 164 | <div class="toolForm"> |
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| 165 | <div class="toolFormTitle">Step ${int(step.order_index)+1}: ${module.name}</div> |
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| 166 | <div class="toolFormBody"> |
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| 167 | ${do_inputs( module.get_runtime_inputs(), step.state.inputs, errors.get( step.id, dict() ), "", step )} |
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| 168 | % if step.annotations: |
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| 169 | <hr/> |
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| 170 | <div class='form-row'> |
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| 171 | <label>Annotation:</label> ${step.annotations[0].annotation} |
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| 172 | </div> |
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| 173 | % endif |
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| 174 | </div> |
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| 175 | </div> |
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| 176 | %endif |
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| 177 | %endfor |
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| 178 | <input type="submit" name="run_workflow" value="Run workflow" /> |
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| 179 | </form> |
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