%PDF-1.1 %ρ\r 1 0 obj << /CreationDate (D:20080403110358) /ModDate (D:20080403110358) /Title (R Graphics Output) /Producer (R 2.6.2) /Creator (R) >> endobj 2 0 obj << /Type /Catalog /Pages 3 0 R >> endobj 5 0 obj << /Type /Font /Subtype /Type1 /Name /F1 /BaseFont /ZapfDingbats >> endobj 6 0 obj << /Type /Page /Parent 3 0 R /Contents 7 0 R /Resources 4 0 R >> endobj 7 0 obj << /Length 8 0 R >> stream q Q q 59.04 73.44 342.72 299.52 re W n 0.000 0.000 0.000 RG 2.25 w [] 0 d 1 J 1 j 10.00 M 73.40 149.79 m 86.76 149.79 l S 0.75 w [ 3.00 5.00] 0 d 80.08 100.85 m 80.08 149.79 l S 80.08 296.61 m 80.08 263.98 l S 0.75 w [] 0 d 76.74 100.85 m 83.42 100.85 l S 76.74 296.61 m 83.42 296.61 l S 73.40 149.79 m 86.76 149.79 l 86.76 263.98 l 73.40 263.98 l 73.40 149.79 l S 2.25 w [] 0 d 90.11 280.30 m 103.47 280.30 l S 0.75 w [ 3.00 5.00] 0 d 96.79 263.98 m 96.79 280.30 l S 96.79 296.61 m 96.79 296.61 l S 0.75 w [] 0 d 93.45 263.98 m 100.13 263.98 l S 93.45 296.61 m 100.13 296.61 l S 90.11 280.30 m 103.47 280.30 l 103.47 296.61 l 90.11 296.61 l 90.11 280.30 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 93.82 342.96 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 106.81 280.30 m 120.17 280.30 l S 0.75 w [ 3.00 5.00] 0 d 113.49 263.98 m 113.49 263.98 l S 113.49 280.30 m 113.49 280.30 l S 0.75 w [] 0 d 110.15 263.98 m 116.83 263.98 l S 110.15 280.30 m 116.83 280.30 l S 106.81 263.98 m 120.17 263.98 l 120.17 280.30 l 106.81 280.30 l 106.81 263.98 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 110.53 179.82 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 123.51 247.67 m 136.87 247.67 l S 0.75 w [ 3.00 5.00] 0 d 130.19 247.67 m 130.19 247.67 l S 130.19 247.67 m 130.19 247.67 l S 0.75 w [] 0 d 126.85 247.67 m 133.53 247.67 l S 126.85 247.67 m 133.53 247.67 l S 123.51 247.67 m 136.87 247.67 l 136.87 247.67 l 123.51 247.67 l 123.51 247.67 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 127.23 261.39 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 140.21 280.30 m 153.57 280.30 l S 0.75 w [ 3.00 5.00] 0 d 146.89 231.36 m 146.89 247.67 l S 146.89 361.87 m 146.89 296.61 l S 0.75 w [] 0 d 143.55 231.36 m 150.23 231.36 l S 143.55 361.87 m 150.23 361.87 l S 140.21 247.67 m 153.57 247.67 l 153.57 296.61 l 140.21 296.61 l 140.21 247.67 l S 2.25 w [] 0 d 156.91 280.30 m 170.27 280.30 l S 0.75 w [ 3.00 5.00] 0 d 163.59 198.73 m 163.59 231.36 l S 163.59 280.30 m 163.59 280.30 l S 0.75 w [] 0 d 160.25 198.73 m 166.93 198.73 l S 160.25 280.30 m 166.93 280.30 l S 156.91 231.36 m 170.27 231.36 l 170.27 280.30 l 156.91 280.30 l 156.91 231.36 l S 2.25 w [] 0 d 173.61 280.30 m 186.98 280.30 l S 0.75 w [ 3.00 5.00] 0 d 180.29 247.67 m 180.29 263.98 l S 180.29 280.30 m 180.29 280.30 l S 0.75 w [] 0 d 176.95 247.67 m 183.64 247.67 l S 176.95 280.30 m 183.64 280.30 l S 173.61 263.98 m 186.98 263.98 l 186.98 280.30 l 173.61 280.30 l 173.61 263.98 l S 2.25 w [] 0 d 190.32 247.67 m 203.68 247.67 l S 0.75 w [ 3.00 5.00] 0 d 197.00 247.67 m 197.00 247.67 l S 197.00 263.98 m 197.00 263.98 l S 0.75 w [] 0 d 193.66 247.67 m 200.34 247.67 l S 193.66 263.98 m 200.34 263.98 l S 190.32 247.67 m 203.68 247.67 l 203.68 263.98 l 190.32 263.98 l 190.32 247.67 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 194.03 294.02 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 207.02 263.98 m 220.38 263.98 l S 0.75 w [ 3.00 5.00] 0 d 213.70 247.67 m 213.70 247.67 l S 213.70 263.98 m 213.70 263.98 l S 0.75 w [] 0 d 210.36 247.67 m 217.04 247.67 l S 210.36 263.98 m 217.04 263.98 l S 207.02 247.67 m 220.38 247.67 l 220.38 263.98 l 207.02 263.98 l 207.02 247.67 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 210.74 342.96 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 223.72 263.98 m 237.08 263.98 l S 0.75 w [ 3.00 5.00] 0 d 230.40 263.98 m 230.40 263.98 l S 230.40 280.30 m 230.40 280.30 l S 0.75 w [] 0 d 227.06 263.98 m 233.74 263.98 l S 227.06 280.30 m 233.74 280.30 l S 223.72 263.98 m 237.08 263.98 l 237.08 280.30 l 223.72 280.30 l 223.72 263.98 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 227.44 163.51 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 240.42 280.30 m 253.78 280.30 l S 0.75 w [ 3.00 5.00] 0 d 247.10 263.98 m 247.10 263.98 l S 247.10 280.30 m 247.10 280.30 l S 0.75 w [] 0 d 243.76 263.98 m 250.44 263.98 l S 243.76 280.30 m 250.44 280.30 l S 240.42 263.98 m 253.78 263.98 l 253.78 280.30 l 240.42 280.30 l 240.42 263.98 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 244.14 179.82 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 257.12 263.98 m 270.48 263.98 l S 0.75 w [ 3.00 5.00] 0 d 263.80 247.67 m 263.80 247.67 l S 263.80 280.30 m 263.80 280.30 l S 0.75 w [] 0 d 260.46 247.67 m 267.14 247.67 l S 260.46 280.30 m 267.14 280.30 l S 257.12 247.67 m 270.48 247.67 l 270.48 280.30 l 257.12 280.30 l 257.12 247.67 l S 2.25 w [] 0 d 273.82 247.67 m 287.19 247.67 l S 0.75 w [ 3.00 5.00] 0 d 280.51 84.53 m 280.51 182.42 l S 280.51 296.61 m 280.51 296.61 l S 0.75 w [] 0 d 277.16 84.53 m 283.85 84.53 l S 277.16 296.61 m 283.85 296.61 l S 273.82 182.42 m 287.19 182.42 l 287.19 296.61 l 273.82 296.61 l 273.82 182.42 l S 2.25 w [] 0 d 290.53 280.30 m 303.89 280.30 l S 0.75 w [ 3.00 5.00] 0 d 297.21 280.30 m 297.21 280.30 l S 297.21 280.30 m 297.21 280.30 l S 0.75 w [] 0 d 293.87 280.30 m 300.55 280.30 l S 293.87 280.30 m 300.55 280.30 l S 290.53 280.30 m 303.89 280.30 l 303.89 280.30 l 290.53 280.30 l 290.53 280.30 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 294.25 294.02 Tm (l) Tj 0 Tr /F1 1 Tf 1 Tr 7.48 0 0 7.48 294.25 228.76 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 307.23 263.98 m 320.59 263.98 l S 0.75 w [ 3.00 5.00] 0 d 313.91 247.67 m 313.91 247.67 l S 313.91 280.30 m 313.91 280.30 l S 0.75 w [] 0 d 310.57 247.67 m 317.25 247.67 l S 310.57 280.30 m 317.25 280.30 l S 307.23 247.67 m 320.59 247.67 l 320.59 280.30 l 307.23 280.30 l 307.23 247.67 l S 2.25 w [] 0 d 323.93 231.36 m 337.29 231.36 l S 0.75 w [ 3.00 5.00] 0 d 330.61 198.73 m 330.61 215.04 l S 330.61 231.36 m 330.61 231.36 l S 0.75 w [] 0 d 327.27 198.73 m 333.95 198.73 l S 327.27 231.36 m 333.95 231.36 l S 323.93 215.04 m 337.29 215.04 l 337.29 231.36 l 323.93 231.36 l 323.93 215.04 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 327.65 261.39 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 340.63 263.98 m 353.99 263.98 l S 0.75 w [ 3.00 5.00] 0 d 347.31 263.98 m 347.31 263.98 l S 347.31 263.98 m 347.31 263.98 l S 0.75 w [] 0 d 343.97 263.98 m 350.65 263.98 l S 343.97 263.98 m 350.65 263.98 l S 340.63 263.98 m 353.99 263.98 l 353.99 263.98 l 340.63 263.98 l 340.63 263.98 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 344.35 179.82 Tm (l) Tj 0 Tr /F1 1 Tf 1 Tr 7.48 0 0 7.48 344.35 277.70 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 357.33 263.98 m 370.69 263.98 l S 0.75 w [ 3.00 5.00] 0 d 364.01 247.67 m 364.01 247.67 l S 364.01 280.30 m 364.01 280.30 l S 0.75 w [] 0 d 360.67 247.67 m 367.35 247.67 l S 360.67 280.30 m 367.35 280.30 l S 357.33 247.67 m 370.69 247.67 l 370.69 280.30 l 357.33 280.30 l 357.33 247.67 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 361.05 81.94 Tm (l) Tj 0 Tr 2.25 w [] 0 d ET 374.04 263.98 m 387.40 263.98 l S 0.75 w [ 3.00 5.00] 0 d 380.72 263.98 m 380.72 263.98 l S 380.72 296.61 m 380.72 296.61 l S 0.75 w [] 0 d 377.38 263.98 m 384.06 263.98 l S 377.38 296.61 m 384.06 296.61 l S 374.04 263.98 m 387.40 263.98 l 387.40 296.61 l 374.04 296.61 l 374.04 263.98 l S BT /F1 1 Tf 1 Tr 7.48 0 0 7.48 377.75 163.51 Tm (l) Tj 0 Tr ET Q q 0.000 0.000 0.000 RG 0.75 w [] 0 d 1 J 1 j 10.00 M 59.04 133.47 m 59.04 296.61 l S 59.04 133.47 m 51.84 133.47 l S 59.04 215.04 m 51.84 215.04 l S 59.04 296.61 m 51.84 296.61 l S BT 0.000 0.000 0.000 rg /F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 126.80 Tm (20) Tj /F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 208.37 Tm (25) Tj /F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 289.94 Tm (30) Tj ET Q q BT 0.000 0.000 0.000 rg /F3 1 Tf 14.00 0.00 -0.00 14.00 147.76 397.45 Tm (boxplot of quality scores) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 130.36 18.72 Tm (position within read \(% of total length\)) Tj ET Q q 0.000 0.000 0.000 RG 0.75 w [] 0 d 1 J 1 j 10.00 M 59.04 73.44 m 401.76 73.44 l 401.76 372.96 l 59.04 372.96 l 59.04 73.44 l S 63.38 73.44 m 380.72 73.44 l S 63.38 73.44 m 63.38 66.24 l S 80.08 73.44 m 80.08 66.24 l S 96.79 73.44 m 96.79 66.24 l S 113.49 73.44 m 113.49 66.24 l S 130.19 73.44 m 130.19 66.24 l S 146.89 73.44 m 146.89 66.24 l S 163.59 73.44 m 163.59 66.24 l S 180.29 73.44 m 180.29 66.24 l S 197.00 73.44 m 197.00 66.24 l S 213.70 73.44 m 213.70 66.24 l S 230.40 73.44 m 230.40 66.24 l S 247.10 73.44 m 247.10 66.24 l S 263.80 73.44 m 263.80 66.24 l S 280.51 73.44 m 280.51 66.24 l S 297.21 73.44 m 297.21 66.24 l S 313.91 73.44 m 313.91 66.24 l S 330.61 73.44 m 330.61 66.24 l S 347.31 73.44 m 347.31 66.24 l S 364.01 73.44 m 364.01 66.24 l S 380.72 73.44 m 380.72 66.24 l S BT 0.000 0.000 0.000 rg /F2 1 Tf 12.00 0.00 -0.00 12.00 60.05 47.52 Tm (0) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 76.75 47.52 Tm (5) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 106.82 47.52 Tm (15) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 140.22 47.52 Tm (25) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 173.62 47.52 Tm (35) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 207.03 47.52 Tm (45) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 240.43 47.52 Tm (55) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 273.83 47.52 Tm (65) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 307.24 47.52 Tm (75) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 340.64 47.52 Tm (85) Tj /F2 1 Tf 12.00 0.00 -0.00 12.00 374.04 47.52 Tm (95) Tj ET Q endstream endobj 8 0 obj 8714 endobj 3 0 obj << /Type /Pages /Kids [ 6 0 R ] /Count 1 /MediaBox [0 0 432 432] >> endobj 4 0 obj << /ProcSet [/PDF /Text] /Font << /F1 5 0 R /F2 10 0 R /F3 11 0 R >> /ExtGState << >> >> endobj 9 0 obj << /Type /Encoding /BaseEncoding /WinAnsiEncoding /Differences [ 45/minus 96/quoteleft 144/dotlessi /grave /acute /circumflex /tilde /macron /breve /dotaccent /dieresis /.notdef /ring /cedilla /.notdef /hungarumlaut /ogonek /caron /space] >> endobj 10 0 obj << /Type /Font /Subtype /Type1 /Name /F2 /BaseFont /Helvetica /Encoding 9 0 R >> endobj 11 0 obj << /Type /Font /Subtype /Type1 /Name /F3 /BaseFont /Helvetica-Bold /Encoding 9 0 R >> endobj xref 0 12 0000000000 65535 f 0000000021 00000 n 0000000163 00000 n 0000009162 00000 n 0000009245 00000 n 0000000212 00000 n 0000000295 00000 n 0000000375 00000 n 0000009142 00000 n 0000009349 00000 n 0000009606 00000 n 0000009703 00000 n trailer << /Size 12 /Info 1 0 R /Root 2 0 R >> startxref 9805 %%EOF