[2] | 1 | #This is a sample file distributed with Galaxy that is used to define a |
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| 2 | #list of nucelotide BLAST databases, using two columns tab separated: |
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| 3 | # |
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| 4 | #<database caption> <path to base name> |
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| 5 | # |
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| 6 | #The captions typically contain spaces and might end with the build date. |
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| 7 | #It is important that the actual database name does not have a space in it, |
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| 8 | #and that the first tab that appears in the line is right before the path. |
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| 9 | # |
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| 10 | #So, for example, if your database is nt and the path to your base name |
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| 11 | #is /depot/data2/galaxy/blastdb/nt/nt.chunk, then the blastdb.loc entry |
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| 12 | #would look like this: |
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| 13 | # |
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| 14 | #nt 02 Dec 2009 /depot/data2/galaxy/blastdb/nt/nt.chunk |
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| 15 | # |
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| 16 | #and your /depot/data2/galaxy/blastdb/nt directory would contain all of |
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| 17 | #your "base names" (e.g.): |
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| 18 | # |
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| 19 | #-rw-r--r-- 1 wychung galaxy 23437408 2008-04-09 11:26 nt.chunk.00.nhr |
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| 20 | #-rw-r--r-- 1 wychung galaxy 3689920 2008-04-09 11:26 nt.chunk.00.nin |
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| 21 | #-rw-r--r-- 1 wychung galaxy 251215198 2008-04-09 11:26 nt.chunk.00.nsq |
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| 22 | #...etc... |
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| 23 | # |
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| 24 | #Your blastdb.loc file should include an entry per line for each "base name" |
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| 25 | #you have stored. For example: |
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| 26 | # |
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| 27 | #nt 02 Dec 2009 /depot/data2/galaxy/blastdb/nt/nt.chunk |
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| 28 | #wgs 30 Nov 2009 /depot/data2/galaxy/blastdb/wgs/wgs.chunk |
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| 29 | #test 20 Sep 2008 /depot/data2/galaxy/blastdb/test/test |
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| 30 | #...etc... |
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| 31 | # |
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| 32 | #See also blastdb_p.loc which is for any protein BLAST database. |
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