| [2] | 1 | #This is a sample file distributed with Galaxy that enables tools to use a |
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| 2 | #directory of 2bit genome files for use with codingSnps. You will need to |
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| 3 | #supply these files and then create a codingSnps.loc file similar to this one |
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| 4 | #(store it in this directory) that points to the directories in which those |
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| 5 | #files are stored. The codingSnps.loc file has this format (white space |
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| 6 | #characters are TAB characters): |
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| 7 | # |
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| 8 | #<build> <file_path> |
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| 9 | # |
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| 10 | #So, for example, if your codingSnps.loc began like this: |
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| 11 | # |
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| 12 | #hg18 /galaxy/data/hg18/seq |
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| 13 | # |
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| 14 | #then your /galaxy/data/hg18/seq directory would need to contain the following |
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| 15 | #2bit file: |
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| 16 | # |
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| 17 | #-rw-r--r-- 1 g2data g2data 807604784 Dec 8 13:21 hg18.2bit |
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| 18 | # |
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| 19 | #Your codingSnps.loc file should include an entry per line for each file you |
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| 20 | #have stored that you want to be available. Note that your files should |
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| 21 | #all have the extension '2bit'. |
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| 22 | #hg18 /galaxy/data/hg18/seq |
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| 23 | #hg19 /galaxy/data/hg19/seq |
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