root/galaxy-central/tool-data/encode_datasets.loc.sample

リビジョン 2, 9.4 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1#This is a sample file distributed with Galaxy that enables tools
2#to use ENCODE data.  The encode_datasets.loc file has this format
3#(white space characters are TAB characters):
4#
5#<EncodeGroup>  <build> <DisplayName>   <UniqueID>      <FullPathToFile>        <Format>
6#             Encode Groups: ShortHandCode = Group
7#                                       CC = chromatin and chromosomes
8#                                       GT = genes and transcripts
9#                                      MSA = multi-species sequence analysis
10#                                       TR = transcription regulation
11#                                      ALD = All Latest Datasets
12#All files are assumbed to be BED.
13#
14#ALD    hg17    Latest Datasets (20051208)      all_latest_datasets.20051208.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.bed     bed
15#ALD    hg17    Latest Datasets (20051208) [gencode_partitioned]        all_latest_datasets.20051208.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.bed bed
16#ALD    hg17    Latest Datasets (20051208) [gencode_partitioned]        all_latest_datasets.20051208.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.gff gff
17#ALD    hg17    Latest Datasets (20051208)      all_latest_datasets.20051208.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gff     gff
18#ALD    hg17    Latest Datasets (20051209)      all_latest_datasets.20051209.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.bed     bed
19#ALD    hg17    Latest Datasets (20051209) [gencode_partitioned]        all_latest_datasets.20051209.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.bed bed
20#ALD    hg17    Latest Datasets (20051209) [gencode_partitioned]        all_latest_datasets.20051209.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.gff gff
21#ALD    hg17    Latest Datasets (20051209)      all_latest_datasets.20051209.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gff     gff
22#ALD    hg17    Latest Datasets (20051211)      all_latest_datasets.20051211.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.bed     bed
23#ALD    hg17    Latest Datasets (20051211) [gencode_partitioned]        all_latest_datasets.20051211.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.bed bed
24#ALD    hg17    Latest Datasets (20051211) [gencode_partitioned]        all_latest_datasets.20051211.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.gff gff
25#ALD    hg17    Latest Datasets (20051211)      all_latest_datasets.20051211.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gff     gff
26#ALD    hg17    Latest Datasets (20051212)      all_latest_datasets.20051212.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.bed     bed
27#ALD    hg17    Latest Datasets (20051212) [gencode_partitioned]        all_latest_datasets.20051212.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.bed bed
28#ALD    hg17    Latest Datasets (20051212) [gencode_partitioned]        all_latest_datasets.20051212.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.gff gff
29#ALD    hg17    Latest Datasets (20051212)      all_latest_datasets.20051212.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gff     gff
30#ALD    hg17    Latest Datasets (20051214)      all_latest_datasets.20051214.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.bed     bed
31#ALD    hg17    Latest Datasets (20051214) [gencode_partitioned]        all_latest_datasets.20051214.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.bed bed
32#ALD    hg17    Latest Datasets (20051214) [gencode_partitioned]        all_latest_datasets.20051214.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.gff gff
33#ALD    hg17    Latest Datasets (20051214)      all_latest_datasets.20051214.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gff     gff
34#ALD    hg17    Latest Datasets (20051216)      all_latest_datasets.20051216.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.bed     bed
35#ALD    hg17    Latest Datasets (20051216) [gencode_partitioned]        all_latest_datasets.20051216.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.bed bed
36#ALD    hg17    Latest Datasets (20051216) [gencode_partitioned]        all_latest_datasets.20051216.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.gff gff
37#ALD    hg17    Latest Datasets (20051216)      all_latest_datasets.20051216.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gff     gff
38#ALD    hg17    Latest Datasets (20060105)      all_latest_datasets.20060105.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.bed     bed
39#ALD    hg17    Latest Datasets (20060105) [gencode_partitioned]        all_latest_datasets.20060105.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.bed bed
40#ALD    hg17    Latest Datasets (20060105) [gencode_partitioned]        all_latest_datasets.20060105.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.gff gff
41#ALD    hg17    Latest Datasets (20060105)      all_latest_datasets.20060105.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gff     gff
42#ALD    hg17    Latest Datasets (20060106)      all_latest_datasets.20060106.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.bed     bed
43#ALD    hg17    Latest Datasets (20060106) [gencode_partitioned]        all_latest_datasets.20060106.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.bed bed
44#ALD    hg17    Latest Datasets (20060106) [gencode_partitioned]        all_latest_datasets.20060106.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.gff gff
45#ALD    hg17    Latest Datasets (20060106)      all_latest_datasets.20060106.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gff     gff
46#ALD    hg17    Latest Datasets (20060116)      all_latest_datasets.20060116.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.bed     bed
47#ALD    hg17    Latest Datasets (20060116) [gencode_partitioned]        all_latest_datasets.20060116.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.bed bed
48#ALD    hg17    Latest Datasets (20060116) [gencode_partitioned]        all_latest_datasets.20060116.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.gff gff
49#ALD    hg17    Latest Datasets (20060116)      all_latest_datasets.20060116.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gff     gff
50#ALD    hg17    Latest Datasets (20060124)      all_latest_datasets.20060124.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.bed     bed
51#ALD    hg17    Latest Datasets (20060124) [gencode_partitioned]        all_latest_datasets.20060124.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.bed bed
52#ALD    hg17    Latest Datasets (20060124) [gencode_partitioned]        all_latest_datasets.20060124.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.gff gff
53#ALD    hg17    Latest Datasets (20060124)      all_latest_datasets.20060124.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gff     gff
54#ALD    hg17    Latest Datasets (20060204)      all_latest_datasets.20060204.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.bed     bed
55#ALD    hg17    Latest Datasets (20060204) [gencode_partitioned]        all_latest_datasets.20060204.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.bed bed
56#ALD    hg17    Latest Datasets (20060204) [gencode_partitioned]        all_latest_datasets.20060204.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.gff gff
57#ALD    hg17    Latest Datasets (20060204)      all_latest_datasets.20060204.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gff     gff
58#ALD    hg17    Latest Datasets (20060206)      all_latest_datasets.20060206.bed        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.bed     bed
59#ALD    hg17    Latest Datasets (20060206) [gencode_partitioned]        all_latest_datasets.20060206.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.bed bed
60#ALD    hg17    Latest Datasets (20060206) [gencode_partitioned]        all_latest_datasets.20060206.gencode_partitioned.gff    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.gff gff
61#ALD    hg17    Latest Datasets (20060206)      all_latest_datasets.20060206.gff        /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gff     gff
62#ALD    hg17    Latest Datasets (20060209) [gencode_partitioned]        all_latest_datasets.20060209.gencode_partitioned.bed    /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060209.gencode_partitioned.bed bed
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