[2] | 1 | #This is a sample file distributed with Galaxy that enables tools |
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| 2 | #to use genome fasta sequence files. The faseq.loc file has this format |
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| 3 | #(white space characters are TAB characters): |
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| 4 | # |
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| 5 | # <GenomeBuild> <dir> |
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| 6 | # |
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| 7 | # In the dir, each file is fasta format and contains only one sequence. So, |
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| 8 | #for example, if you had hg18 fasta sequences stored in /depot/data2/galaxy/faseq/hg18, |
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| 9 | #then your faseq.loc entry would look like this: |
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| 10 | # |
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| 11 | #hg18 /depot/data2/galaxy/faseq/hg18 |
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| 12 | # |
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| 13 | #and your /depot/data2/galaxy/faseq/hg18 directory would contain all of |
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| 14 | #your fasta sequence files (e.g.): |
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| 15 | # |
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| 16 | #-rw-r--r-- 1 wychung galaxy 138082251 2008-04-16 11:57 chr10.fa |
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| 17 | #-rw-r--r-- 1 wychung galaxy 115564 2008-04-16 11:57 chr10_random.fa |
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| 18 | #-rw-r--r-- 1 wychung galaxy 137141451 2008-04-16 11:58 chr11.fa |
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| 19 | #...etc... |
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| 20 | #Your faseq.loc file should include an entry per line for each set of fasta |
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| 21 | #sequence files you have stored. For example: |
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| 22 | # |
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| 23 | #hg18 /depot/data2/galaxy/faseq/hg18 |
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| 24 | #mm9 /depot/data2/galaxy/faseq/mm9 |
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| 25 | #Arabidopsis /depot/data2/galaxy/faseq/Arabidopsis |
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| 26 | #...etc... |
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