root/galaxy-central/tool-data/faseq.loc.sample

リビジョン 2, 1.0 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central
行番号 
1#This is a sample file distributed with Galaxy that enables tools
2#to use genome fasta sequence files.  The faseq.loc file has this format
3#(white space characters are TAB characters):
4#
5# <GenomeBuild> <dir>
6#
7# In the dir, each file is fasta format and contains only one sequence. So,
8#for example, if you had hg18 fasta sequences stored in /depot/data2/galaxy/faseq/hg18,
9#then your faseq.loc entry would look like this:
10#
11#hg18   /depot/data2/galaxy/faseq/hg18
12#
13#and your /depot/data2/galaxy/faseq/hg18 directory would contain all of
14#your fasta sequence files (e.g.):
15#
16#-rw-r--r--  1 wychung galaxy 138082251 2008-04-16 11:57 chr10.fa
17#-rw-r--r--  1 wychung galaxy    115564 2008-04-16 11:57 chr10_random.fa
18#-rw-r--r--  1 wychung galaxy 137141451 2008-04-16 11:58 chr11.fa
19#...etc...
20#Your faseq.loc file should include an entry per line for each set of fasta
21#sequence files you have stored.  For example:
22#
23#hg18    /depot/data2/galaxy/faseq/hg18
24#mm9     /depot/data2/galaxy/faseq/mm9
25#Arabidopsis     /depot/data2/galaxy/faseq/Arabidopsis
26#...etc...
Note: リポジトリブラウザについてのヘルプは TracBrowser を参照してください。