[2] | 1 | #This is a sample file distributed with Galaxy that enables tools |
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| 2 | #to use a directory of 2bit genome files for use with Lastz. You will |
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| 3 | #need to supply these files and then create a lastz_seqs.loc file |
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| 4 | #similar to this one (store it in this directory) that points to |
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| 5 | #the directories in which those files are stored. The lastz_seqs.loc |
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| 6 | #file has this format (white space characters are TAB characters): |
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| 7 | # |
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| 8 | #<build> <file_path> |
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| 9 | # |
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| 10 | #So, for example, if your lastz_seqs.loc began like this: |
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| 11 | # |
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| 12 | #hg18 /depot/data2/galaxy/twobit/hg18.2bit |
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| 13 | #hg19 /depot/data2/galaxy/twobit/hg19.2bit |
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| 14 | #mm9 /depot/data2/galaxy/twobit/mm9.2bit |
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| 15 | # |
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| 16 | #then your /depot/data2/galaxy/twobit/ directory |
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| 17 | #would need to contain the following 2bit files: |
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| 18 | # |
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| 19 | #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.2bit |
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| 20 | #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit |
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| 21 | #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit |
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| 22 | # |
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| 23 | #Your lastz_seqs.loc file should include an entry per line for |
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| 24 | #each file you have stored that you want to be available. Note that |
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| 25 | #your files should all have the extension '2bit'. |
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