[2] | 1 | #This is a sample file distributed with Galaxy that enables tools |
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| 2 | #to retrieve microbial data via a URL . |
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| 3 | # |
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| 4 | #ORG campJeju_RM1221_1 Campylobacter jejuni RM1221 bacteria Epsilonproteobacteria chr http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=303 UCSC |
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| 5 | #CHR campJeju_RM1221_1 chr Campylobacter jejuni RM1221, complete genome 1777831 57236892 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_003912 |
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| 6 | #DATA campJeju_RM1221_1_chr_CDS campJeju_RM1221_1 chr CDS bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.CDS.bed |
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| 7 | #DATA campJeju_RM1221_1_chr_tRNA campJeju_RM1221_1 chr tRNA bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.tRNA.bed |
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| 8 | #DATA campJeju_RM1221_1_chr_rRNA campJeju_RM1221_1 chr rRNA bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.rRNA.bed |
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| 9 | #DATA campJeju_RM1221_1_chr_seq campJeju_RM1221_1 chr sequence fasta /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.fna |
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| 10 | #DATA campJeju_RM1221_1_chr_GeneMark campJeju_RM1221_1 chr GeneMark bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.GeneMark.bed |
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| 11 | #DATA campJeju_RM1221_1_chr_GeneMarkHMM campJeju_RM1221_1 chr GeneMarkHMM bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.GeneMarkHMM.bed |
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| 12 | #DATA campJeju_RM1221_1_chr_Glimmer3 campJeju_RM1221_1 chr Glimmer3 bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.Glimmer3.bed |
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| 13 | #ORG 12521 Clostridium perfringens SM101 bacteria Firmicutes NC_008262,NC_008263,NC_008264,NC_008265 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=12521 None |
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| 14 | #CHR 12521 NC_008265 Clostridium perfringens phage phiSM101, complete genome 38092 110804020 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008265 |
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| 15 | #DATA 12521_NC_008265_CDS 12521 NC_008265 CDS bed /depot/data2/galaxy/microbes/12521/NC_008265.CDS.bed |
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| 16 | #DATA 12521_NC_008265_tRNA 12521 NC_008265 tRNA bed /depot/data2/galaxy/microbes/12521/NC_008265.tRNA.bed |
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| 17 | #DATA 12521_NC_008265_rRNA 12521 NC_008265 rRNA bed /depot/data2/galaxy/microbes/12521/NC_008265.rRNA.bed |
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| 18 | #DATA 12521_NC_008265_seq 12521 NC_008265 sequence fasta /depot/data2/galaxy/microbes/12521/NC_008265.fna |
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| 19 | #DATA 12521_NC_008265_GeneMark 12521 NC_008265 GeneMark bed /depot/data2/galaxy/microbes/12521/NC_008265.GeneMark.bed |
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| 20 | #DATA 12521_NC_008265_GeneMarkHMM 12521 NC_008265 GeneMarkHMM bed /depot/data2/galaxy/microbes/12521/NC_008265.GeneMarkHMM.bed |
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| 21 | #DATA 12521_NC_008265_Glimmer3 12521 NC_008265 Glimmer3 bed /depot/data2/galaxy/microbes/12521/NC_008265.Glimmer3.bed |
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| 22 | #CHR 12521 NC_008264 Clostridium perfringens SM101 plasmid 2, complete sequence 12206 110804009 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008264 |
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| 23 | #DATA 12521_NC_008264_CDS 12521 NC_008264 CDS bed /depot/data2/galaxy/microbes/12521/NC_008264.CDS.bed |
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| 24 | #DATA 12521_NC_008264_tRNA 12521 NC_008264 tRNA bed /depot/data2/galaxy/microbes/12521/NC_008264.tRNA.bed |
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| 25 | #DATA 12521_NC_008264_rRNA 12521 NC_008264 rRNA bed /depot/data2/galaxy/microbes/12521/NC_008264.rRNA.bed |
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| 26 | #DATA 12521_NC_008264_seq 12521 NC_008264 sequence fasta /depot/data2/galaxy/microbes/12521/NC_008264.fna |
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| 27 | #DATA 12521_NC_008264_GeneMark 12521 NC_008264 GeneMark bed /depot/data2/galaxy/microbes/12521/NC_008264.GeneMark.bed |
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| 28 | #DATA 12521_NC_008264_GeneMarkHMM 12521 NC_008264 GeneMarkHMM bed /depot/data2/galaxy/microbes/12521/NC_008264.GeneMarkHMM.bed |
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| 29 | #DATA 12521_NC_008264_Glimmer3 12521 NC_008264 Glimmer3 bed /depot/data2/galaxy/microbes/12521/NC_008264.Glimmer3.bed |
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| 30 | #CHR 12521 NC_008263 Clostridium perfringens SM101 plasmid 1, complete sequence 12397 110803998 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008263 |
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| 31 | #DATA 12521_NC_008263_CDS 12521 NC_008263 CDS bed /depot/data2/galaxy/microbes/12521/NC_008263.CDS.bed |
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| 32 | #DATA 12521_NC_008263_tRNA 12521 NC_008263 tRNA bed /depot/data2/galaxy/microbes/12521/NC_008263.tRNA.bed |
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| 33 | #DATA 12521_NC_008263_rRNA 12521 NC_008263 rRNA bed /depot/data2/galaxy/microbes/12521/NC_008263.rRNA.bed |
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| 34 | #DATA 12521_NC_008263_seq 12521 NC_008263 sequence fasta /depot/data2/galaxy/microbes/12521/NC_008263.fna |
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| 35 | #DATA 12521_NC_008263_GeneMark 12521 NC_008263 GeneMark bed /depot/data2/galaxy/microbes/12521/NC_008263.GeneMark.bed |
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| 36 | #DATA 12521_NC_008263_GeneMarkHMM 12521 NC_008263 GeneMarkHMM bed /depot/data2/galaxy/microbes/12521/NC_008263.GeneMarkHMM.bed |
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| 37 | #DATA 12521_NC_008263_Glimmer3 12521 NC_008263 Glimmer3 bed /depot/data2/galaxy/microbes/12521/NC_008263.Glimmer3.bed |
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