[2] | 1 | #This is a sample file distributed with Galaxy that is used by the |
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| 2 | #phastOdds scores tool. The phastOdds.loc file has this format (white space |
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| 3 | #characters are TAB characters): |
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| 4 | # |
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| 5 | #<build> <description> <path to phastOdds score files> |
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| 6 | # |
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| 7 | #So, for example, if you had hg17 ENCODE regions only, SEP-2005 tba.v2 alignments |
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| 8 | #stored in /depot/data2/galaxy/phastOdds_precomputed/encode_SEP-2005_tba.v2_phastOdds, |
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| 9 | #then the phastOdds.loc entry would look like this: |
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| 10 | # |
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| 11 | #hg17 ENCODE regions only, SEP-2005 tba.v2 alignments /depot/data2/galaxy/phastOdds_precomputed/encode_SEP-2005_tba.v2_phastOdds |
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| 12 | # |
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| 13 | #and your /depot/data2/galaxy/phastOdds_precomputed/ directory would |
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| 14 | #contain all of your alignment files (e.g.): |
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| 15 | # |
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| 16 | #-rw-r--r-- 1 james g2cache 56555036 2006-02-22 18:26 encode_SEP-2005_tba.v2_phastOdds.h5 |
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| 17 | #-rw-r--r-- 1 james g2cache 1367 2006-02-08 12:23 encode_SEP-2005_tba.v2_phastOdds.mapping.bed |
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| 18 | #...etc... |
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| 19 | # |
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| 20 | #Your phastOdds.loc file should include an entry per line for each phastOdds |
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| 21 | #file you have stored. |
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