[2] | 1 | #This is a sample file distributed with Galaxy that is used by some |
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| 2 | #regional variation tools. The quality_scores.loc file has this format (white |
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| 3 | #space characters are TAB characters): |
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| 4 | # |
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| 5 | #<build> <QualityScoreDirectoryPath> |
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| 6 | # |
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| 7 | #So, for example, if you had panTro2 qualit score files stored in |
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| 8 | #/depot/data2/galaxy/panTro2/quality_scores, then the quality_scores.loc entry |
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| 9 | #would look like this: |
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| 10 | # |
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| 11 | #panTro2 /depot/data2/galaxy/panTro2/quality_scores |
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| 12 | # |
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| 13 | #and your /depot/data2/galaxy/panTro2/quality_scores directory would |
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| 14 | #contain all of your quality score files (e.g.): |
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| 15 | # |
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| 16 | #-rw-r--r-- 1 gua110 galaxy 10964768 2007-10-02 10:33 chr10.qa.bqv |
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| 17 | #-rw-r--r-- 1 gua110 galaxy 1749899 2007-10-02 10:33 chr10_random.qa.bqv |
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| 18 | #-rw-r--r-- 1 gua110 galaxy 11310721 2007-10-02 10:33 chr11.qa.bqv |
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| 19 | #...etc... |
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| 20 | # |
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| 21 | #Your quality_scores.loc file should include an entry per line for each quality score |
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| 22 | #file you have stored. For example: |
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| 23 | # |
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| 24 | #panTro2 /depot/data2/galaxy/panTro2/quality_scores |
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| 25 | #rheMac2 /depot/data2/galaxy/rheMac2/quality_scores |
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| 26 | #ponAbe2 /depot/data2/galaxy/ponAbe2/quality_scores |
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