[3] | 1 | #This is a sample file distributed with Galaxy that is used by some |
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| 2 | #ENCODE tools. The regions.loc file has this format (white space |
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| 3 | #characters are TAB characters): |
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| 4 | # |
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| 5 | #<build> <uid> <region_description> <file_path> |
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| 6 | # |
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| 7 | #So, for example, if you had ENCODE Regions for build hg16 stored in |
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| 8 | #/depot/data2/galaxy/regions/encode_regions_coords_hg16.bed, then the |
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| 9 | #regions.loc entry would look like this: |
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| 10 | # |
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| 11 | #hg16 encode_hg16 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg16.bed |
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| 12 | # |
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| 13 | #and your /depot/data2/galaxy/regions/ directory would |
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| 14 | #contain all of your regions files (e.g.): |
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| 15 | # |
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| 16 | #-rw-r--r-- 1 dan g2cache 1367 2006-03-14 13:55 encode_regions_coords_hg16.bed |
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| 17 | #-rw-r--r-- 1 dan g2cache 1367 2006-03-14 13:53 encode_regions_coords_hg17.bed |
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| 18 | #...etc... |
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| 19 | # |
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| 20 | #Your regions.loc file should include an entry per line for each region |
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| 21 | #file you have stored. For example: |
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| 22 | # |
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| 23 | #hg16 encode_hg16 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg16.bed |
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| 24 | #hg17 encode_hg17 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg17.bed |
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