root/galaxy-central/tool-data/srma_index.loc

リビジョン 3, 1.0 KB (コミッタ: kohda, 14 年 前)

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1#This is a sample file distributed with Galaxy that enables tools
2#to use a directory of SRMA indexed sequences data files. You will need
3#to create these data files and then create a srma_index.loc file
4#similar to this one (store it in this directory) that points to
5#the directories in which those files are stored. The srma_index.loc
6#file has this format (white space is the TAB character):
7#
8#<build>        <fasta_file>
9#
10#So, for example, if you had hg18 indexed and stored in
11#/depot/data2/galaxy/srma/hg18/,
12#then the srma_index.loc entry would look like this:
13#
14#hg18   /depot/data2/galaxy/srma/hg18/hg18.fa
15#
16#and your /depot/data2/galaxy/srma/hg18/ directory
17#would contain the following three files:
18#hg18.fa
19#hg18.dict
20#hg18.fa.fai
21#
22#The dictionary file for each reference (ex. hg18.dict) must be
23#created via Picard (http://picard.sourceforge.net). Note that
24#the dict file does not have the .fa extension although the
25#path list in the loc file does include it.
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