[3] | 1 | <tables> |
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| 2 | <!-- Locations of MAF files that have been indexed with bx-python --> |
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| 3 | <table name="indexed_maf_files"> |
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| 4 | <columns>name, value, dbkey, species</columns> |
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| 5 | <file path="tool-data/maf_index.loc" /> |
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| 6 | </table> |
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| 7 | <!-- Locations of indexes in the BWA mapper format --> |
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| 8 | <table name="bwa_indexes"> |
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| 9 | <columns>name, value</columns> |
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| 10 | <file path="tool-data/bwa_index.loc" /> |
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| 11 | </table> |
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| 12 | <!-- Locations of indexes in the Bowtie mapper format --> |
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| 13 | <table name="bowtie_indexes"> |
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| 14 | <columns>name, value</columns> |
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| 15 | <file path="tool-data/bowtie_indices.loc" /> |
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| 16 | </table> |
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| 17 | <!-- Locations of indexes in the BFAST mapper format --> |
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| 18 | <table name="bfast_indexes" comment_char="#"> |
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| 19 | <columns>value, dbkey, formats, name, path</columns> |
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| 20 | <file path="tool-data/bfast_indexes.loc" /> |
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| 21 | </table> |
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| 22 | </tables> |
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