microbial_import.py $CDS,$tRNA,$rRNA,$sequence,$GeneMark,$GeneMarkHMM,$Glimmer3 $output ${GALAXY_DATA_INDEX_DIR}/microbial_data.loc
This tool will allow you to obtain various genomic datasets for any completed Microbial Genome Project as listed at NCBI_.
.. _NCBI: http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi?view=1
Current datasets available include
1. CDS
2. tRNA
3. rRNA
4. FASTA Sequences
5. GeneMark Annotations
6. GeneMarkHMM Annotations
7. Glimmer3 Annotations
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Organisms in **bold** are available at the UCSC Browser.
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.. class:: infomark
**Note:** Having trouble locating your organism? Click here_ for a list of available species and their location.
.. _here: http://bitbucket.org/galaxy/galaxy-central/wiki/Microbes