[2] | 1 | <?xml version="1.0"?>
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| 2 | <!--
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| 3 | If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
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| 4 | the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
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| 5 | initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
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| 6 | -->
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| 7 | <tool name="UCSC Archaea" id="ucsc_table_direct_archaea1" tool_type="data_source">
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| 8 | <description>table browser</description>
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| 9 | <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
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| 10 | <inputs action="http://archaea.ucsc.edu/cgi-bin/hgTables" check_values="false" method="get">
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| 11 | <display>go to UCSC Table Browser $GALAXY_URL</display>
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| 12 | <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
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| 13 | <param name="tool_id" type="hidden" value="ucsc_table_direct_archaea1" />
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| 14 | <param name="sendToGalaxy" type="hidden" value="1" />
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| 15 | <param name="hgta_compressType" type="hidden" value="none" />
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| 16 | <param name="hgta_outputType" type="hidden" value="bed" />
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| 17 | </inputs>
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| 18 | <request_param_translation>
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| 19 | <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
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| 20 | <request_param galaxy_name="URL" remote_name="URL" missing="" />
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| 21 | <request_param galaxy_name="dbkey" remote_name="db" missing="?" />
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| 22 | <request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
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| 23 | <request_param galaxy_name="table" remote_name="hgta_table" missing="unknown table" />
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| 24 | <request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" />
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| 25 | <request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="tabular" >
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| 26 | <value_translation>
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| 27 | <value galaxy_value="tabular" remote_value="primaryTable" />
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| 28 | <value galaxy_value="tabular" remote_value="selectedFields" />
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| 29 | <value galaxy_value="wig" remote_value="wigData" />
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| 30 | <value galaxy_value="interval" remote_value="tab" />
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| 31 | <value galaxy_value="html" remote_value="hyperlinks" />
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| 32 | <value galaxy_value="fasta" remote_value="sequence" />
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| 33 | <value galaxy_value="gtf" remote_value="gff" />
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| 34 | </value_translation>
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| 35 | </request_param>
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| 36 | </request_param_translation>
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| 37 | <uihints minwidth="800"/>
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| 38 | <outputs>
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| 39 | <data name="output" format="tabular" />
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| 40 | </outputs>
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| 41 | <options sanitize="False" refresh="True"/>
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| 42 | </tool>
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