Predicts potentially antigenic regions of a protein sequence, using the method of Kolaskar and Tongaonkar.embossantigenic -sequence $input1 -outfile $out_file1 -minlen $minlen -rformat2 $out_format1 -auto
You can view the original documentation here_.
.. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/antigenic.html