[2] | 1 | <tool id="EMBOSS: cpgplot15" name="cpgplot" version="5.0.0">
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| 2 | <description>Plot CpG rich areas</description>
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| 3 | <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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| 4 | <command interpreter="perl">emboss_cpgplot_wrapper.pl cpgplot -sequence $input1 -window $window -minlen $minlen -minpc $minpc -outfile $outfile -graph png -goutfile $goutfile -outfeat $outfeat -minoe $minoe -auto</command>
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| 5 | <inputs>
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| 6 | <param format="data" name="input1" type="data">
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| 7 | <label>On query</label>
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| 8 | </param>
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| 9 | <param name="window" size="4" type="integer" value="100">
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| 10 | <label>Window Size</label>
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| 11 | </param>
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| 12 | <param name="minlen" size="4" type="integer" value="200">
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| 13 | <label>Minimum length</label>
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| 14 | </param>
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| 15 | <param name="minoe" size="4" type="float" value="0.6">
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| 16 | <label>Minimum average observed to expected ratio</label>
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| 17 | </param>
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| 18 | <param name="minpc" size="4" type="float" value="50.0">
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| 19 | <label>Minimum average percentage of G plus C</label>
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| 20 | </param>
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| 21 | </inputs>
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| 22 | <outputs>
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| 23 | <data format="cpgplot" name="outfile" />
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| 24 | <data format="png" name="goutfile" />
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| 25 | <data format="gff" name="outfeat" />
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| 26 | </outputs>
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| 27 | <code file="emboss_format_corrector.py" />
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| 28 | <help> |
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| 29 | You can view the original documentation here_. |
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| 30 | |
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| 31 | .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cpgplot.html |
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| 32 | </help> |
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| 33 | </tool> |
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