[2] | 1 | <tool id="EMBOSS: dottup26" name="dottup" version="5.0.0">
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| 2 | <description>Displays a wordmatch dotplot of two sequences</description>
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| 3 | <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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| 4 | <command interpreter="perl">emboss_single_outputfile_wrapper.pl dottup -asequence $input1 -bsequence $input2 -goutfile $out_file1 -wordsize $wordsize -boxit $boxit -graph png -xygraph png -auto</command>
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| 5 | <inputs>
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| 6 | <param format="data" name="input1" type="data">
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| 7 | <label>Sequence 1</label>
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| 8 | </param>
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| 9 | <param format="data" name="input2" type="data">
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| 10 | <label>Sequence 2</label>
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| 11 | </param>
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| 12 | <param name="wordsize" size="4" type="text" value="4">
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| 13 | <label>Word size</label>
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| 14 | </param>
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| 15 | <param name="boxit" type="select">
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| 16 | <label>Draw a box around dotplot</label>
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| 17 | <option value="yes">Yes</option>
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| 18 | <option value="no">No</option>
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| 19 | </param>
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| 20 | </inputs>
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| 21 | <outputs>
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| 22 | <data format="png" name="out_file1" />
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| 23 | </outputs> |
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| 24 | <!-- functional tests not possible since image output contains file name information and timestamp -->
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| 25 | <help> |
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| 26 | You can view the original documentation here_. |
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| 27 | |
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| 28 | .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/dottup.html |
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| 29 | </help> |
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| 30 | </tool> |
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