Finds DNA inverted repeats emboss einverted -sequence $input1 -outfile $out_file1 -gap $gap -threshold $threshold -match $match -mismatch $mismatch -maxrepeat $maxrepeat -auto On query Gap penalty Minimum score threshold Match score Mismatch score Maximum separation between the start of repeat and the end of the inverted repeat

.. class:: warningmark The input dataset needs to be sequences. ----- You can view the original documentation here_. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/einverted.html