Nucleic acid pattern search emboss fuzznuc -sequence $input1 -outfile $out_file1 -pattern '$pattern' -pmismatch $mismatch -complement $complement -rformat2 $out_format1 -auto Sequences Search pattern Number of mismatches Search complementary strand No Yes Output Report File Format SeqTable EMBL GENBANK GFF PIR SwissProt DbMotif Diffseq Excel (tab delimited) FeatTable Motif Regions SRS Simple Fuzznuc Output File SRS Table TagSeq

.. class:: warningmark The input dataset needs to be sequences. ----- You can view the original documentation here_. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/fuzznuc.html