Finds and extracts open reading frames (ORFs)
emboss
getorf -sequence $input1 -outseq $out_file1 -table $table -minsize $minsize -maxsize $maxsize -find $find -methionine $methionine -circular $circular -reverse $reverse -flanking $flanking
-osformat2 $out_format1 -auto
.. class:: warningmark
The input dataset needs to be sequences.
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You can view the original documentation here_.
.. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/getorf.html