Report nucleic acid binding motifs emboss helixturnhelix -sequence $input1 -outfile $out_file1 -mean $mean -sd $sd -minsd $minsd -eightyseven $eightyseven -rformat2 $out_format1 -auto Sequences Mean value Standard Deviation value Minimum SD Use the old (1987) weight data No Yes Output Report File Format Motif EMBL GENBANK GFF PIR SwissProt DbMotif Diffseq Excel (tab delimited) FeatTable Regions SeqTable SRS Simple SRS Table TagSeq

You can view the original documentation here_. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/helixturnhelix.html