[2] | 1 | <tool id="EMBOSS: iep45" name="iep" version="5.0.0">
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| 2 | <description>Calculates the isoelectric point of a protein</description>
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| 3 | <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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| 4 | <command>iep -sequence $input1 -outfile $out_file1 -step $step -amino $amino -graph png -termini $termini -auto</command>
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| 5 | <inputs>
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| 6 | <param format="data" name="input1" type="data">
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| 7 | <label>Sequences</label>
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| 8 | </param>
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| 9 | <param name="step" size="5" type="text" value=".5">
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| 10 | <label>Step value for pH</label>
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| 11 | </param>
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| 12 | <param name="amino" size="5" type="text" value="1">
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| 13 | <label>Number of N-termini</label>
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| 14 | </param>
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| 15 | <param name="termini" type="select">
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| 16 | <label>Include charge at N and C terminus</label>
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| 17 | <option value="yes">Yes</option>
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| 18 | <option value="no">No</option>
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| 19 | </param>
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| 20 | </inputs>
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| 21 | <outputs>
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| 22 | <data format="iep" name="out_file1" />
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| 23 | </outputs> |
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| 24 | <tests> |
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| 25 | <test> |
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| 26 | <param name="input1" value="2.fasta"/> |
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| 27 | <param name="step" value="0.5"/> |
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| 28 | <param name="amino" value="1"/> |
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| 29 | <param name="termini" value="yes"/> |
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| 30 | <output name="out_file1" file="emboss_iep_out.iep"/> |
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| 31 | </test> |
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| 32 | </tests>
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| 33 | <help> |
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| 34 | You can view the original documentation here_. |
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| 35 | |
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| 36 | .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/iep.html |
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| 37 | </help> |
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| 38 | </tool> |
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