[2] | 1 | <tool id="EMBOSS: infoseq46" name="infoseq" version="5.0.0">
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| 2 | <!-- info contains file information always --> |
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| 3 | <description>Displays some simple information about sequences</description>
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| 4 | <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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| 5 | <command>infoseq -sequence $input1 -outfile $out_file1 -html $html_out1 -heading $heading -usa $usa -name $disname -accession $accession -gi $gi -version $version -type $type -length $length -pgc
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| 6 | $pgc -description $description -auto</command>
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| 7 | <inputs>
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| 8 | <param format="data" name="input1" type="data">
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| 9 | <label>Sequences</label>
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| 10 | </param>
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| 11 | <param name="html_out1" type="select">
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| 12 | <label>Format output as an HTML table</label>
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| 13 | <option value="no">No</option>
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| 14 | <option value="yes">Yes</option>
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| 15 | </param>
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| 16 | <param name="heading" type="select">
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| 17 | <label>Display column headings</label>
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| 18 | <option value="yes">Yes</option>
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| 19 | <option value="no">No</option>
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| 20 | </param>
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| 21 | <param name="usa" type="select">
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| 22 | <label>Display the USA of the sequence</label>
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| 23 | <option value="yes">Yes</option>
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| 24 | <option value="no">No</option>
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| 25 | </param>
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| 26 | <param name="disname" type="select">
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| 27 | <label>Display 'name' column</label>
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| 28 | <option value="yes">Yes</option>
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| 29 | <option value="no">No</option>
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| 30 | </param>
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| 31 | <param name="accession" type="select">
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| 32 | <label>Display 'accession' column</label>
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| 33 | <option value="yes">Yes</option>
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| 34 | <option value="no">No</option>
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| 35 | </param>
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| 36 | <param name="gi" type="select">
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| 37 | <label>Display 'GI' column</label>
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| 38 | <option value="no">No</option>
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| 39 | <option value="yes">Yes</option>
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| 40 | </param>
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| 41 | <param name="version" type="select">
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| 42 | <label>Display 'version' column</label>
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| 43 | <option value="no">No</option>
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| 44 | <option value="yes">Yes</option>
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| 45 | </param>
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| 46 | <param name="type" type="select">
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| 47 | <label>Display 'type' column</label>
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| 48 | <option value="yes">Yes</option>
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| 49 | <option value="no">No</option>
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| 50 | </param>
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| 51 | <param name="length" type="select">
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| 52 | <label>Display 'length' column</label>
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| 53 | <option value="yes">Yes</option>
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| 54 | <option value="no">No</option>
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| 55 | </param>
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| 56 | <param name="pgc" type="select">
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| 57 | <label>Display 'percent GC content' column</label>
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| 58 | <option value="yes">Yes</option>
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| 59 | <option value="no">No</option>
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| 60 | </param>
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| 61 | <param name="description" type="select">
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| 62 | <label>Display 'description' column</label>
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| 63 | <option value="yes">Yes</option>
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| 64 | <option value="no">No</option>
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| 65 | </param>
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| 66 | </inputs>
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| 67 | <outputs>
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| 68 | <data format="txt" name="out_file1" />
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| 69 | </outputs>
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| 70 | <code file="emboss_format_corrector.py" />
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| 71 | <help> |
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| 72 | You can view the original documentation here_. |
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| 73 | |
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| 74 | .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/infoseq.html |
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| 75 | </help> |
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| 76 | </tool> |
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