[2] | 1 | <tool id="EMBOSS: octanol63" name="octanol" version="5.0.0"> |
---|
| 2 | <!-- graphics output with filename, no functional tests added -->
|
---|
| 3 | <description>Displays protein hydropathy</description>
|
---|
| 4 | <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
|
---|
| 5 | <command interpreter="perl">emboss_single_outputfile_wrapper.pl octanol -sequence $input1 -graph png -goutfile $out_file1 -width $width -octanolplot $octanolplot -interfaceplot $interfaceplot
|
---|
| 6 | -differenceplot $differenceplot -auto</command>
|
---|
| 7 | <inputs>
|
---|
| 8 | <param format="data" name="input1" type="data">
|
---|
| 9 | <label>Sequences</label>
|
---|
| 10 | </param>
|
---|
| 11 | <param name="width" size="4" type="text" value="19">
|
---|
| 12 | <label>Window size</label>
|
---|
| 13 | </param>
|
---|
| 14 | <param name="octanolplot" type="select">
|
---|
| 15 | <label>Display the octanol plot</label>
|
---|
| 16 | <option value="no">No</option>
|
---|
| 17 | <option value="yes">Yes</option>
|
---|
| 18 | </param>
|
---|
| 19 | <param name="interfaceplot" type="select">
|
---|
| 20 | <label>Display the interface plot</label>
|
---|
| 21 | <option value="no">No</option>
|
---|
| 22 | <option value="yes">Yes</option>
|
---|
| 23 | </param>
|
---|
| 24 | <param name="differenceplot" type="select">
|
---|
| 25 | <label>Display the difference plot</label>
|
---|
| 26 | <option value="yes">Yes</option>
|
---|
| 27 | <option value="no">No</option>
|
---|
| 28 | </param>
|
---|
| 29 | </inputs>
|
---|
| 30 | <outputs>
|
---|
| 31 | <data format="png" name="out_file1" />
|
---|
| 32 | </outputs>
|
---|
| 33 | <help> |
---|
| 34 | You can view the original documentation here_. |
---|
| 35 | |
---|
| 36 | .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/octanol.html |
---|
| 37 | </help> |
---|
| 38 | </tool> |
---|