Displays protein hydropathy emboss emboss_single_outputfile_wrapper.pl octanol -sequence $input1 -graph png -goutfile $out_file1 -width $width -octanolplot $octanolplot -interfaceplot $interfaceplot -differenceplot $differenceplot -auto Sequences Window size Display the octanol plot No Yes Display the interface plot No Yes Display the difference plot Yes No You can view the original documentation here_. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/octanol.html