Looks for inverted repeats in a nucleotide sequence emboss palindrome -sequence $input1 -outfile $out_file1 -minpallen $minpallen -maxpallen $maxpallen -gaplimit $gaplimit -nummismatches $nummismatches -overlap $overlap -auto Sequences Minimum length of palindrome Maximum length of palindrome Maximum gap between repeated regions Number of mismatches allowed Report overlapping matches Yes No

.. class:: warningmark The input dataset needs to be sequences. ----- You can view the original documentation here_. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/palindrome.html