Predicts coiled coil regions emboss pepcoil -sequence $input1 -outfile $out_file1 -window $window -coil $coil -frame $frame -other $other -auto Sequence Window size Report coiled coil regions Yes No Show coil frameshifts Yes No Report non coiled coil regions Yes No

You can view the original documentation here_. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/pepcoil.html