[2] | 1 | <tool id="EMBOSS: pepinfo69" name="pepinfo" version="5.0.0">
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| 2 | <!-- puts file info in output files --> |
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| 3 | <description>Plots simple amino acid properties in parallel</description>
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| 4 | <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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| 5 | <command interpreter="perl">emboss_single_outputfile_wrapper.pl pepinfo -sequence $input1 -outfile $out_file1 -goutfile $out_file2 -graph png -hwindow $hwindow $plot_type -auto</command>
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| 6 | <inputs>
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| 7 | <param format="data" name="input1" type="data">
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| 8 | <label>Sequence</label>
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| 9 | </param>
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| 10 | <param name="hwindow" size="4" type="text" value="9">
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| 11 | <label>Window size for hydropathy averaging</label>
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| 12 | </param>
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| 13 | <param name="plot_type" type="select">
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| 14 | <label>Choose a plot type</label>
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| 15 | <option value="-generalplot yes -hydropathyplot no">Histogram of general properties</option>
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| 16 | <option value="-generalplot no -hydropathyplot yes">Graphs of hydropathy</option>
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| 17 | </param>
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| 18 | </inputs>
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| 19 | <outputs>
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| 20 | <data format="pepinfo" name="out_file1" />
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| 21 | <data format="png" name="out_file2" />
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| 22 | </outputs>
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| 23 | <help> |
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| 24 | You can view the original documentation here_. |
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| 25 | |
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| 26 | .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/pepinfo.html |
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| 27 | </help> |
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| 28 | </tool> |
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