Plots simple amino acid properties in parallel emboss emboss_single_outputfile_wrapper.pl pepinfo -sequence $input1 -outfile $out_file1 -goutfile $out_file2 -graph png -hwindow $hwindow $plot_type -auto Sequence Window size for hydropathy averaging Choose a plot type Histogram of general properties Graphs of hydropathy You can view the original documentation here_. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/pepinfo.html