[2] | 1 | <tool id="EMBOSS: prettyseq80" name="prettyseq" version="5.0.0">
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| 2 | <description>Output sequence with translated ranges</description>
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| 3 | <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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| 4 | <command>prettyseq -sequence $input1 -outfile $out_file1 -ruler $ruler -plabel $plabel -nlabel $nlabel -width $width -auto</command>
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| 5 | <inputs>
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| 6 | <param format="fasta" name="input1" type="data">
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| 7 | <label>Sequence</label>
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| 8 | </param>
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| 9 | <param name="ruler" type="select">
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| 10 | <label>Add a ruler</label>
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| 11 | <option value="yes">Yes</option>
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| 12 | <option value="no">No</option>
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| 13 | </param>
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| 14 | <param name="plabel" type="select">
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| 15 | <label>Number translations</label>
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| 16 | <option value="yes">Yes</option>
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| 17 | <option value="no">No</option>
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| 18 | </param>
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| 19 | <param name="nlabel" type="select">
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| 20 | <label>Number DNA sequence</label>
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| 21 | <option value="yes">Yes</option>
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| 22 | <option value="no">No</option>
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| 23 | </param>
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| 24 | <param name="width" size="4" type="text" value="60">
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| 25 | <label>Width of screen</label>
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| 26 | </param>
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| 27 | </inputs>
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| 28 | <outputs>
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| 29 | <data format="prettyseq" name="out_file1" />
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| 30 | </outputs> |
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| 31 | <tests> |
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| 32 | <test> |
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| 33 | <param name="input1" value="2.fasta"/> |
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| 34 | <param name="ruler" value="yes"/> |
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| 35 | <param name="plabel" value="yes"/> |
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| 36 | <param name="nlabel" value="yes"/> |
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| 37 | <param name="width" value="60"/> |
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| 38 | <output name="out_file1" file="emboss_prettyseq_out.prettyseq"/> |
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| 39 | </test> |
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| 40 | </tests>
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| 41 | <help> |
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| 42 | |
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| 43 | .. class:: warningmark |
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| 44 | |
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| 45 | The input dataset needs to be sequences. |
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| 46 | |
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| 47 | ----- |
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| 48 | |
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| 49 | You can view the original documentation here_. |
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| 50 | |
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| 51 | .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/prettyseq.html |
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| 52 | </help> |
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| 53 | </tool> |
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