Reports protein signal cleavage sites emboss sigcleave -sequence $input1 -outfile $out_file1 -minweight "$minweight" -prokaryote $prokaryote -rformat2 $out_format1 -auto Sequences Minimum scoring weight value for the predicted cleavage site Specifies the sequence is prokaryotic and changes the default scoring data file No Yes Output Report File Format Motif EMBL GENBANK GFF PIR SwissProt DbMotif Diffseq Excel (tab delimited) FeatTable Regions SeqTable SRS Simple SRS Table TagSeq

You can view the original documentation here_. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/sigcleave.html