[2] | 1 | <tool id="EMBOSS: tmap99" name="tmap" version="5.0.0">
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| 2 | <description>Displays membrane spanning regions</description>
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| 3 | <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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| 4 | <command interpreter="perl">emboss_single_outputfile_wrapper.pl tmap -sequences $input1 -outfile $out_file1 -goutfile $out_file2 -graph png -rformat $out_format1 -auto</command>
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| 5 | <inputs>
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| 6 | <param format="data" name="input1" type="data">
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| 7 | <label>Sequence</label>
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| 8 | </param>
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| 9 | <param name="out_format1" type="select">
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| 10 | <label>Output Report File Format</label>
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| 11 | <option value="seqtable ">SeqTable</option>
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| 12 | <option value="embl">EMBL</option>
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| 13 | <option value="genbank">GENBANK</option>
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| 14 | <option value="gff">GFF</option>
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| 15 | <option value="pir">PIR</option>
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| 16 | <option value="swiss">SwissProt</option>
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| 17 | <option value="dbmotif">DbMotif</option>
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| 18 | <option value="diffseq">Diffseq</option>
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| 19 | <option value="excel">Excel (tab delimited)</option>
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| 20 | <option value="feattable">FeatTable</option>
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| 21 | <option value="motif">Motif</option>
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| 22 | <option value="regions">Regions</option>
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| 23 | <option value="simple">SRS Simple</option>
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| 24 | <option value="srs">SRS</option>
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| 25 | <option value="table">Table</option>
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| 26 | <option value="tagseq">TagSeq</option>
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| 27 | </param>
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| 28 | </inputs>
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| 29 | <outputs>
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| 30 | <data format="seqtable" name="out_file1" />
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| 31 | <data format="png" name="out_file2" />
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| 32 | </outputs>
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| 33 | <code file="emboss_format_corrector.py" />
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| 34 | <help> |
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| 35 | You can view the original documentation here_. |
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| 36 | |
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| 37 | .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/tmap.html |
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| 38 | </help> |
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| 39 | </tool> |
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