root/galaxy-central/tools/emboss_5/emboss_wobble.xml @ 3

<tool id="EMBOSS: wobble108" name="wobble" version="5.0.0">
  <description>Wobble base plot</description>
  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
  <command interpreter="perl">emboss_single_outputfile_wrapper.pl wobble -sequence $input1 -graph png -goutfile $ofile1 -outfile $ofile2 -window "$window" -bases "$bases" -auto</command>
  <inputs>
    <param format="fasta" name="input1" type="data">
      <label>Sequence</label>
    </param>
    <param name="window" size="5" type="text" value="30">
      <label>Window size, in codons</label>
    </param>
    <param name="bases" size="6" type="text" value="GC">
      <label>Bases used</label>
    </param>
  </inputs>
  <outputs>
    <data format="png" name="ofile1" />
    <data format="wobble" name="ofile2" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="window" value="30"/>
      <param name="bases" value="GC"/>
      <output name="ofile2" file="emboss_wobble_out.wobble"/>
    </test>
  </tests>
  <help>

.. class:: warningmark 

The input dataset needs to be sequences. 

----- 

    You can view the original documentation here_.
    
    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/wobble.html
  </help>
</tool>