[2] | 1 | <tool id="Condense characters1" name="Condense">
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| 2 | <description>consecutive characters</description>
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| 3 | <command interpreter="perl">condense_characters.pl $input $character $out_file1</command>
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| 4 | <inputs>
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| 5 | <!-- <display>condense all consecutive $character from $input</display> -->
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| 6 | <param name="character" type="select" label="Condense all consecutive">
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| 7 | <option value="T">Tabs</option>
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| 8 | <option value="Sp">Spaces</option>
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| 9 | <option value="Dt">Dots</option>
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| 10 | <option value="C">Commas</option>
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| 11 | <option value="D">Dashes</option>
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| 12 | <option value="U">Underscores</option>
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| 13 | <option value="P">Pipes</option>
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| 14 | </param>
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| 15 | <param format="txt" name="input" type="data" label="in this Query"/>
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| 16 | </inputs>
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| 17 | <outputs>
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| 18 | <data format="input" name="out_file1" metadata_source="input" />
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| 19 | </outputs>
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| 20 | <tests>
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| 21 | <test>
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| 22 | <param name="character" value="T"/>
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| 23 | <param name="input" value="1.bed"/>
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| 24 | <output name="out_file1" file="eq-condense.dat"/>
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| 25 | </test>
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| 26 | </tests>
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| 27 | <help>
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| 28 |
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| 29 | **What it does**
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| 30 |
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| 31 | This tool condenses all consecutive characters of a specified type.
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| 32 |
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| 33 | -----
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| 34 |
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| 35 | **Example**
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| 36 |
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| 37 | - Input file::
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| 38 |
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| 39 | geneX,,,10,,,,,20
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| 40 | geneY,,5,,,,,12,15,9,
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| 41 |
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| 42 | - Condense all consecutive commas. The above file will be converted into::
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| 43 |
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| 44 | geneX,10,20
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| 45 | geneY,5,12,15,9
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| 46 |
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| 47 | </help>
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| 48 | </tool>
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