[2] | 1 | <tool id="mergeCols1" name="Merge Columns" version="1.0.1"> |
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| 2 | <description>together</description> |
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| 3 | <command interpreter="python"> |
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| 4 | mergeCols.py |
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| 5 | $input1 |
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| 6 | $out_file1 |
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| 7 | $col1 |
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| 8 | $col2 |
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| 9 | #for $col in $columns |
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| 10 | ${col.datacol} |
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| 11 | #end for |
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| 12 | </command> |
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| 13 | <inputs> |
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| 14 | <param format="tabular" name="input1" type="data" label="Select data" help="Query missing? See TIP below."/> |
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| 15 | <param name="col1" label="Merge column" type="data_column" data_ref="input1" /> |
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| 16 | <param name="col2" label="with column" type="data_column" data_ref="input1" help="Need to add more columns? Use controls below."/> |
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| 17 | <repeat name="columns" title="Columns"> |
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| 18 | <param name="datacol" label="Add column" type="data_column" data_ref="input1" /> |
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| 19 | </repeat> |
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| 20 | </inputs> |
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| 21 | <outputs> |
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| 22 | <data format="tabular" name="out_file1" /> |
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| 23 | </outputs> |
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| 24 | <tests>
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| 25 | <test>
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| 26 | <param name="input1" value="1.bed"/> |
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| 27 | <param name="col1" value="4" /> |
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| 28 | <param name="col2" value="1" /> |
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| 29 | <param name="datacol" value="6" />
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| 30 | <output name="out_file1" file="mergeCols.dat"/>
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| 31 | </test>
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| 32 | </tests>
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| 33 | <help> |
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| 34 | |
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| 35 | .. class:: infomark |
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| 36 | |
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| 37 | **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* |
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| 38 | |
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| 39 | ----- |
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| 40 | |
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| 41 | **What it does**
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| 42 |
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| 43 | This tool merges columns together. Any number of valid columns can be merged in any order.
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| 44 |
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| 45 | -----
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| 46 |
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| 47 | **Example**
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| 48 |
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| 49 | Input dataset (five columns: c1, c2, c3, c4, and c5)::
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| 50 |
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| 51 | 1 10 1000 gene1 chr
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| 52 | 2 100 1500 gene2 chr
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| 53 |
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| 54 | merging columns "**c5,c1**" will return::
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| 55 |
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| 56 | 1 10 1000 gene1 chr chr1
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| 57 | 2 100 1500 gene2 chr chr2
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| 58 |
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| 59 | .. class:: warningmark |
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| 60 |
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| 61 | Note that all original columns are preserved and the result of merge is added as the rightmost column. |
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| 62 | </help> |
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| 63 | </tool> |
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