#if str($fastq_output) == "fastq_false" #sff_extract.py $clip --seq_file=$out_file3 --qual_file=$out_file4 --xml_file=$out_file2 $input #elif str($fastq_output) == "fastq_true" #sff_extract.py $clip --fastq --seq_file=$out_file1 --xml_file=$out_file2 $input #end if# No Yes fastq_output is True fastq_output is False fastq_output is False

**What it does** This tool extracts data from the 454 Sequencer SFF format and creates three files containing the: Sequences (FASTA), Qualities (QUAL) and Clippings (XML)